CircRNA Information

General Information
circRNA Basic Information
CircID chr21:46130769|46131039
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTGACCCGAAACTCGGTTTCTGGGGGCCCTGGAGGTGCAACGGTCCAGCCCCGCAGGCAGTGAGCAAAGCTCTGAACACAGCAGGGTGACCTCACGCTGCACCGCAGCCTTCACAGAACGCTTGAGACATGGACGCCGTCTGAGCACGCACGAGCTGGCAGATGGGGTTCCCTCAGTGAGCTTATGAGTGACGCAGCTCATTCAGTGAAAGGAAGGGCAGCCTCCCTGTTAAGGCCACACCTAGGAACCGGCTTAAATGTCCAGAAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:46130769|46131039 hsa-miR-370-5p 0 0 1
chr21:46130769|46131039 hsa-miR-370-3p 0 0 1
chr21:46130769|46131039 hsa-miR-384 0 0 1
chr21:46130769|46131039 hsa-miR-422a 0 0 1
chr21:46130769|46131039 hsa-miR-558 0 0 1
chr21:46130769|46131039 hsa-miR-604 0 0 1
chr21:46130769|46131039 hsa-miR-668-5p 0 0 1
chr21:46130769|46131039 hsa-miR-668-3p 0 0 1
chr21:46130769|46131039 hsa-miR-744-5p 0 0 1
chr21:46130769|46131039 hsa-miR-744-3p 0 0 1
chr21:46130769|46131039 hsa-miR-938 0 0 1
chr21:46130769|46131039 hsa-miR-1178-5p 0 0 1
chr21:46130769|46131039 hsa-miR-1178-3p 0 0 1
chr21:46130769|46131039 hsa-miR-1202 0 1 1
chr21:46130769|46131039 hsa-miR-663b 0 0 1
chr21:46130769|46131039 hsa-miR-1294 0 1 1
chr21:46130769|46131039 hsa-miR-1299 0 0 1
chr21:46130769|46131039 hsa-miR-513c-5p 0 0 1
chr21:46130769|46131039 hsa-miR-513c-3p 0 0 1
chr21:46130769|46131039 hsa-miR-1321 0 0 1
chr21:46130769|46131039 hsa-miR-296-5p 0 0 1
chr21:46130769|46131039 hsa-miR-485-5p 0 0 1
chr21:46130769|46131039 hsa-miR-361-3p 0 0 1
chr21:46130769|46131039 hsa-miR-671-3p 0 1 1
chr21:46130769|46131039 hsa-miR-556-5p 0 1 1
chr21:46130769|46131039 hsa-miR-378 0 0 1
chr21:46130769|46131039 hsa-miR-644 0 0 1
chr21:46130769|46131039 hsa-miR-516b 0 0 1
chr21:46130769|46131039 hsa-miR-644a 0 1 0
chr21:46130769|46131039 hsa-miR-663a 1 0 0
chr21:46130769|46131039 hsa-miR-762 1 1 0
chr21:46130769|46131039 hsa-miR-3918 0 1 0
chr21:46130769|46131039 hsa-miR-4420 0 1 0
chr21:46130769|46131039 hsa-miR-4508 1 1 0
chr21:46130769|46131039 hsa-miR-4656 1 0 0
chr21:46130769|46131039 hsa-miR-4734 1 0 0
chr21:46130769|46131039 hsa-miR-5705 1 0 0
chr21:46130769|46131039 hsa-miR-6860 1 0 0
chr21:46130769|46131039 hsa-miR-9986 0 1 0
chr21:46130769|46131039 hsa-miR-6765-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6089 1 0 0
chr21:46130769|46131039 hsa-miR-6727-5p 1 0 0
chr21:46130769|46131039 hsa-miR-7108-5p 1 1 0
chr21:46130769|46131039 hsa-miR-6796-5p 0 1 0
chr21:46130769|46131039 hsa-miR-185-3p 1 1 0
chr21:46130769|46131039 hsa-miR-23a-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6735-3p 1 0 0
chr21:46130769|46131039 hsa-miR-6882-3p 0 1 0
chr21:46130769|46131039 hsa-miR-6786-5p 1 0 0
chr21:46130769|46131039 hsa-miR-3944-3p 1 0 0
chr21:46130769|46131039 hsa-miR-6784-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6894-3p 1 0 0
chr21:46130769|46131039 hsa-miR-3667-3p 0 1 0
chr21:46130769|46131039 hsa-miR-4743-5p 1 0 0
chr21:46130769|46131039 hsa-miR-4638-3p 1 1 0
chr21:46130769|46131039 hsa-miR-7850-5p 1 0 0
chr21:46130769|46131039 hsa-miR-3944-5p 0 1 0
chr21:46130769|46131039 hsa-miR-1251-3p 0 1 0
chr21:46130769|46131039 hsa-miR-4727-5p 0 1 0
chr21:46130769|46131039 hsa-miR-6816-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6775-5p 1 0 0
chr21:46130769|46131039 hsa-miR-5001-5p 1 1 0
chr21:46130769|46131039 hsa-miR-6754-5p 1 1 0
chr21:46130769|46131039 hsa-miR-6756-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6813-5p 1 0 0
chr21:46130769|46131039 hsa-miR-3620-5p 1 0 0
chr21:46130769|46131039 hsa-miR-5189-5p 1 0 0
chr21:46130769|46131039 hsa-miR-10396a-5p 0 1 0
chr21:46130769|46131039 hsa-miR-4685-5p 1 0 0
chr21:46130769|46131039 hsa-miR-4749-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6846-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6848-5p 1 0 0
chr21:46130769|46131039 hsa-miR-3187-5p 1 0 0
chr21:46130769|46131039 hsa-miR-6885-5p 1 0 0
chr21:46130769|46131039 hsa-miR-324-3p 1 0 0
chr21:46130769|46131039 hsa-miR-6750-5p 0 1 0
chr21:46130769|46131039 hsa-miR-6893-3p 0 1 0
chr21:46130769|46131039 hsa-miR-10400-3p 1 0 0
chr21:46130769|46131039 hsa-miR-6837-5p 0 1 0
chr21:46130769|46131039 hsa-miR-4756-5p 1 1 0
chr21:46130769|46131039 hsa-miR-330-5p 1 0 0
chr21:46130769|46131039 hsa-miR-9902 0 1 0
chr21:46130769|46131039 hsa-miR-302d-5p 0 1 0
chr21:46130769|46131039 hsa-miR-655-5p 0 1 0
chr21:46130769|46131039 hsa-miR-302b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:46130769|46131039
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MHRSLHRTLETWTPSEHARAGRWGSLSELMSDAAHSVKGRAASLLRPHLGTGLNVQKL
Nucleotide Sequence CTGCACCGCAGCCTTCACAGAACGCTTGAGACATGGACGCCGTCTGAGCACGCACGAGCTGGCAGATGGGGTTCCCTCAGTGAGCTTATGAGTGACGCAGCTCATTCAGTGAAAGGAAGGGCAGCCTCCCTGTTAAGGCCACACCTAGGAACCGGCTTAAATGTCCAGAAACTC
CircID chr21:46130769|46131039
ORF Type ORF2
Protein Length 55
Nucleotide Length 168
Protein Sequence MGALEVQRSSPAGSEQSSEHSRVTSRCTAAFTERLRHGRRLSTHELADGVPSVSL
Nucleotide Sequence CTGGGGGCCCTGGAGGTGCAACGGTCCAGCCCCGCAGGCAGTGAGCAAAGCTCTGAACACAGCAGGGTGACCTCACGCTGCACCGCAGCCTTCACAGAACGCTTGAGACATGGACGCCGTCTGAGCACGCACGAGCTGGCAGATGGGGTTCCCTCAGTGAGCTTATGA
CircID chr21:46130769|46131039
ORF Type ORF3
Protein Length 67
Nucleotide Length 201
Protein Sequence MSCVTHKLTEGTPSASSCVLRRRPCLKRSVKAAVQREVTLLCSELCSLPAGLDRCTSRAPRNRVSGQ
Nucleotide Sequence ATGAGCTGCGTCACTCATAAGCTCACTGAGGGAACCCCATCTGCCAGCTCGTGCGTGCTCAGACGGCGTCCATGTCTCAAGCGTTCTGTGAAGGCTGCGGTGCAGCGTGAGGTCACCCTGCTGTGTTCAGAGCTTTGCTCACTGCCTGCGGGGCTGGACCGTTGCACCTCCAGGGCCCCCAGAAACCGAGTTTCGGGTCAG
CircID chr21:46130769|46131039
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MRCSVRSPCCVQSFAHCLRGWTVAPPGPPETEFRVR
Nucleotide Sequence CTGCGGTGCAGCGTGAGGTCACCCTGCTGTGTTCAGAGCTTTGCTCACTGCCTGCGGGGCTGGACCGTTGCACCTCCAGGGCCCCCAGAAACCGAGTTTCGGGTCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab