CircRNA Information

General Information
circRNA Basic Information
CircID chr21:46284458|46284652
Strand +
CircType exon
Host Gene ENSG00000160294.9;
Algorism CIRI2;
Sequence CTGTTAGTAGTAATAATTCATTATCTGCCTTTACCCCTGCTTTGTCAAACCAAAATGTAGAGGAAGAGAAGAGAGGACCTAAGTCAATATTTGGAAGTTCTAATAATAGCTTCAGTAGCTTCCCTGTATCATCTGCGGTTTTGGGCGAACCTTTCCAGGCTAGCAAAGCAGGTGTCAGGCAGGGGTGTGAAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr21:46284458|46284652 hsa-miR-377-5p 0 0 1
chr21:46284458|46284652 hsa-miR-377-3p 0 0 1
chr21:46284458|46284652 hsa-miR-412-5p 0 0 1
chr21:46284458|46284652 hsa-miR-412-3p 0 0 1
chr21:46284458|46284652 hsa-miR-596 0 0 1
chr21:46284458|46284652 hsa-miR-621 0 0 1
chr21:46284458|46284652 hsa-miR-659-5p 0 0 1
chr21:46284458|46284652 hsa-miR-659-3p 0 0 1
chr21:46284458|46284652 hsa-miR-942-5p 0 0 1
chr21:46284458|46284652 hsa-miR-942-3p 0 0 1
chr21:46284458|46284652 hsa-miR-944 0 0 1
chr21:46284458|46284652 hsa-miR-1228-5p 0 0 1
chr21:46284458|46284652 hsa-miR-1228-3p 0 0 1
chr21:46284458|46284652 hsa-miR-1236-5p 0 0 1
chr21:46284458|46284652 hsa-miR-1236-3p 0 0 1
chr21:46284458|46284652 hsa-miR-127-5p 0 0 1
chr21:46284458|46284652 hsa-miR-330-3p 0 0 1
chr21:46284458|46284652 hsa-miR-875-3p 0 0 1
chr21:46284458|46284652 hsa-miR-556-3p 0 0 1
chr21:46284458|46284652 hsa-miR-514 0 0 1
chr21:46284458|46284652 hsa-miR-1254 0 0 1
chr21:46284458|46284652 hsa-miR-1201 0 0 1
chr21:46284458|46284652 hsa-miR-220a 0 0 1
chr21:46284458|46284652 hsa-miR-3936 0 1 0
chr21:46284458|46284652 hsa-miR-3978 0 1 0
chr21:46284458|46284652 hsa-miR-8086 1 0 0
chr21:46284458|46284652 hsa-miR-103a-2-5p 0 1 0
chr21:46284458|46284652 hsa-miR-6747-3p 0 1 0
chr21:46284458|46284652 hsa-miR-6510-5p 0 1 0
chr21:46284458|46284652 hsa-miR-3682-3p 0 1 0
chr21:46284458|46284652 hsa-miR-6873-3p 0 1 0
chr21:46284458|46284652 hsa-miR-6881-5p 0 1 0
chr21:46284458|46284652 hsa-miR-6749-5p 1 0 0
chr21:46284458|46284652 hsa-miR-6809-3p 0 1 0
chr21:46284458|46284652 hsa-miR-7111-3p 1 1 0
chr21:46284458|46284652 hsa-miR-6886-5p 0 1 0
chr21:46284458|46284652 hsa-miR-6730-3p 0 1 0
chr21:46284458|46284652 hsa-miR-1251-3p 0 1 0
chr21:46284458|46284652 hsa-miR-888-3p 0 1 0
chr21:46284458|46284652 hsa-miR-1207-5p 1 0 0
chr21:46284458|46284652 hsa-miR-6893-5p 0 1 0
chr21:46284458|46284652 hsa-miR-7107-5p 1 0 0
chr21:46284458|46284652 hsa-miR-6722-3p 0 1 0
chr21:46284458|46284652 hsa-miR-6852-3p 0 1 0
chr21:46284458|46284652 hsa-miR-6511a-5p 1 0 0
chr21:46284458|46284652 hsa-miR-6801-3p 0 1 0
chr21:46284458|46284652 hsa-miR-4723-3p 0 1 0
chr21:46284458|46284652 hsa-miR-103a-1-5p 0 1 0
chr21:46284458|46284652 hsa-miR-6833-3p 0 1 0
chr21:46284458|46284652 hsa-miR-7155-3p 0 1 0
chr21:46284458|46284652 hsa-miR-548ay-3p 0 1 0
chr21:46284458|46284652 hsa-miR-548at-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr21:46284458|46284652
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MEVLIIASVASLYHLRFWANLSRLAKQVSGRGVKK
Nucleotide Sequence TTGGAAGTTCTAATAATAGCTTCAGTAGCTTCCCTGTATCATCTGCGGTTTTGGGCGAACCTTTCCAGGCTAGCAAAGCAGGTGTCAGGCAGGGGTGTGAAGAAG
CircID chr21:46284458|46284652
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MSNQNVEEEKRGPKSIFGSSNNSFSSFPVSSAVLGEPFQASKAGVRQGCEE
Nucleotide Sequence TTGTCAAACCAAAATGTAGAGGAAGAGAAGAGAGGACCTAAGTCAATATTTGGAAGTTCTAATAATAGCTTCAGTAGCTTCCCTGTATCATCTGCGGTTTTGGGCGAACCTTTCCAGGCTAGCAAAGCAGGTGTCAGGCAGGGGTGTGAAGAA
CircID chr21:46284458|46284652
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MTPALLAWKGSPKTADDTGKLLKLLLELPNIDLGPLFSSSTFWFDKAGVKADNELLLLT
Nucleotide Sequence CTGACACCTGCTTTGCTAGCCTGGAAAGGTTCGCCCAAAACCGCAGATGATACAGGGAAGCTACTGAAGCTATTATTAGAACTTCCAAATATTGACTTAGGTCCTCTCTTCTCTTCCTCTACATTTTGGTTTGACAAAGCAGGGGTAAAGGCAGATAATGAATTATTACTACTAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab