CircRNA Information

General Information
circRNA Basic Information
CircID chr22:17108327|17108499
Strand -
CircType exon
Host Gene ENSG00000177663.12;
Algorism CIRI2;
Sequence CTGATCCCCCCACCGCTGAAGCCCAGGAAGGTCTGGATCATCTACTCAGCCGACCACCCCCTCTACGTGGACGTGGTCCTGAAATTCGCCCAGTTCCTGCTCACCGCCTGCGGCACGGAAGTGGCCCTGGACCTGCTGGAAGAGCAGGCCATCTCGGAGGCAGGAGTCATGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:17108327|17108499 hsa-miR-214-5p 0 0 1
chr22:17108327|17108499 hsa-miR-214-3p 0 0 1
chr22:17108327|17108499 hsa-miR-608 1 0 1
chr22:17108327|17108499 hsa-miR-640 0 0 1
chr22:17108327|17108499 hsa-miR-873-5p 0 0 1
chr22:17108327|17108499 hsa-miR-873-3p 0 0 1
chr22:17108327|17108499 hsa-miR-1236-5p 0 0 1
chr22:17108327|17108499 hsa-miR-1236-3p 0 0 1
chr22:17108327|17108499 hsa-miR-1293 0 0 1
chr22:17108327|17108499 hsa-miR-1277-5p 0 0 1
chr22:17108327|17108499 hsa-miR-1277-3p 0 0 1
chr22:17108327|17108499 hsa-miR-338-3p 0 0 1
chr22:17108327|17108499 hsa-miR-323-5p 0 0 1
chr22:17108327|17108499 hsa-miR-923 0 0 1
chr22:17108327|17108499 hsa-miR-3142 1 0 0
chr22:17108327|17108499 hsa-miR-4322 1 0 0
chr22:17108327|17108499 hsa-miR-4265 1 0 0
chr22:17108327|17108499 hsa-miR-4292 1 0 0
chr22:17108327|17108499 hsa-miR-3937 1 0 0
chr22:17108327|17108499 hsa-miR-4706 1 0 0
chr22:17108327|17108499 hsa-miR-6860 1 0 0
chr22:17108327|17108499 hsa-miR-6799-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6721-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6732-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6782-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6786-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6784-5p 1 0 0
chr22:17108327|17108499 hsa-miR-3127-5p 1 0 0
chr22:17108327|17108499 hsa-miR-4690-5p 1 0 0
chr22:17108327|17108499 hsa-miR-4787-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6792-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6737-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6752-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6756-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6803-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6842-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6751-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6879-5p 1 0 0
chr22:17108327|17108499 hsa-miR-7111-5p 1 0 0
chr22:17108327|17108499 hsa-miR-3620-5p 1 0 0
chr22:17108327|17108499 hsa-miR-5189-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6836-5p 1 0 0
chr22:17108327|17108499 hsa-miR-328-5p 1 0 0
chr22:17108327|17108499 hsa-miR-4685-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6858-5p 1 0 0
chr22:17108327|17108499 hsa-miR-3187-5p 1 0 0
chr22:17108327|17108499 hsa-miR-6783-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:17108327|17108499
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence LIPPPLKPRKVWIIYSADHPLYVDVVLKFAQFLLTACGTEVALDLLEEQAISEAGVM
Nucleotide Sequence CTGATCCCCCCACCGCTGAAGCCCAGGAAGGTCTGGATCATCTACTCAGCCGACCACCCCCTCTACGTGGACGTGGTCCTGAAATTCGCCCAGTTCCTGCTCACCGCCTGCGGCACGGAAGTGGCCCTGGACCTGCTGGAAGAGCAGGCCATCTCGGAGGCAGGAGTCATG
CircID chr22:17108327|17108499
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MDHLLSRPPPLRGRGPEIRPVPAHRLRHGSGPGPAGRAGHLGGRSHD
Nucleotide Sequence CTGGATCATCTACTCAGCCGACCACCCCCTCTACGTGGACGTGGTCCTGAAATTCGCCCAGTTCCTGCTCACCGCCTGCGGCACGGAAGTGGCCCTGGACCTGCTGGAAGAGCAGGCCATCTCGGAGGCAGGAGTCATGAC
CircID chr22:17108327|17108499
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MTPASEMACSSSRSRATSVPQAVSRNWANFRTTST
Nucleotide Sequence ATGACTCCTGCCTCCGAGATGGCCTGCTCTTCCAGCAGGTCCAGGGCCACTTCCGTGCCGCAGGCGGTGAGCAGGAACTGGGCGAATTTCAGGACCACGTCCACGTAG
CircID chr22:17108327|17108499
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MLFQQVQGHFRAAGGEQELGEFQDHVHVEGVVG
Nucleotide Sequence CTGCTCTTCCAGCAGGTCCAGGGCCACTTCCGTGCCGCAGGCGGTGAGCAGGAACTGGGCGAATTTCAGGACCACGTCCACGTAGAGGGGGTGGTCGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab