CircRNA Information

General Information
circRNA Basic Information
CircID chr22:19019028|19019246
Strand +
CircType exon
Host Gene ENSG00000273032.1;
Algorism CIRI2;
Sequence CCCTGTCCCGGCCCCGGGGGCCAAGGGCCTGCCAGTAGGGCTCAGTTGCCTGGAGCCTGCTCATCCCATCCCCCAGTTCACTTTGTTTGTGGAATCTCCCTGTTGCCACTGCCCCTGGATGGAATGGCAGGGCCATCCTACAAGTACCCAGACACTTGGCATCAGTGGTGTGTCAAAACAACTCCAAGGGTTTTCTGTGATCCTGCAAGCCCTGTGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:19019028|19019246 hsa-miR-34a-5p 0 0 1
chr22:19019028|19019246 hsa-miR-34a-3p 0 0 1
chr22:19019028|19019246 hsa-miR-328-5p 0 0 1
chr22:19019028|19019246 hsa-miR-328-3p 0 0 1
chr22:19019028|19019246 hsa-miR-449a 0 0 1
chr22:19019028|19019246 hsa-miR-484 0 0 1
chr22:19019028|19019246 hsa-miR-432-5p 0 0 1
chr22:19019028|19019246 hsa-miR-432-3p 0 0 1
chr22:19019028|19019246 hsa-miR-193b-5p 0 0 1
chr22:19019028|19019246 hsa-miR-193b-3p 0 0 1
chr22:19019028|19019246 hsa-miR-520g-5p 0 0 1
chr22:19019028|19019246 hsa-miR-520g-3p 0 0 1
chr22:19019028|19019246 hsa-miR-520h 0 0 1
chr22:19019028|19019246 hsa-miR-625-5p 0 0 1
chr22:19019028|19019246 hsa-miR-625-3p 0 0 1
chr22:19019028|19019246 hsa-miR-637 1 0 1
chr22:19019028|19019246 hsa-miR-449b-5p 0 0 1
chr22:19019028|19019246 hsa-miR-449b-3p 0 0 1
chr22:19019028|19019246 hsa-miR-892b 0 0 1
chr22:19019028|19019246 hsa-miR-1231 0 0 1
chr22:19019028|19019246 hsa-miR-1286 0 0 1
chr22:19019028|19019246 hsa-miR-1291 0 0 1
chr22:19019028|19019246 hsa-miR-1255a 0 0 1
chr22:19019028|19019246 hsa-miR-1265 0 0 1
chr22:19019028|19019246 hsa-miR-1275 0 1 1
chr22:19019028|19019246 hsa-miR-1225-3p 1 0 1
chr22:19019028|19019246 hsa-miR-486-3p 1 0 1
chr22:19019028|19019246 hsa-miR-1225-5p 1 0 1
chr22:19019028|19019246 hsa-miR-1207-5p 0 0 1
chr22:19019028|19019246 hsa-miR-34c-5p 0 1 1
chr22:19019028|19019246 hsa-miR-193a-3p 0 0 1
chr22:19019028|19019246 hsa-miR-362-3p 0 0 1
chr22:19019028|19019246 hsa-miR-1233 0 0 1
chr22:19019028|19019246 hsa-miR-1255b 0 0 1
chr22:19019028|19019246 hsa-miR-220c 0 0 1
chr22:19019028|19019246 hsa-miR-514 0 0 1
chr22:19019028|19019246 hsa-miR-329 0 0 1
chr22:19019028|19019246 hsa-miR-608 1 1 0
chr22:19019028|19019246 hsa-miR-612 1 0 0
chr22:19019028|19019246 hsa-miR-3155a 0 1 0
chr22:19019028|19019246 hsa-miR-4270 1 0 0
chr22:19019028|19019246 hsa-miR-4281 1 0 0
chr22:19019028|19019246 hsa-miR-4515 1 0 0
chr22:19019028|19019246 hsa-miR-4525 1 1 0
chr22:19019028|19019246 hsa-miR-4539 1 0 0
chr22:19019028|19019246 hsa-miR-4651 1 0 0
chr22:19019028|19019246 hsa-miR-4656 1 0 0
chr22:19019028|19019246 hsa-miR-4673 1 1 0
chr22:19019028|19019246 hsa-miR-4688 1 0 0
chr22:19019028|19019246 hsa-miR-4739 1 0 0
chr22:19019028|19019246 hsa-miR-4767 1 0 0
chr22:19019028|19019246 hsa-miR-5090 1 0 0
chr22:19019028|19019246 hsa-miR-8075 1 1 0
chr22:19019028|19019246 hsa-miR-8089 1 0 0
chr22:19019028|19019246 hsa-miR-10226 1 0 0
chr22:19019028|19019246 hsa-miR-6861-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6894-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6728-5p 1 1 0
chr22:19019028|19019246 hsa-miR-5187-5p 0 1 0
chr22:19019028|19019246 hsa-miR-6757-5p 1 1 0
chr22:19019028|19019246 hsa-miR-874-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6741-5p 1 1 0
chr22:19019028|19019246 hsa-miR-6727-5p 1 0 0
chr22:19019028|19019246 hsa-miR-181a-2-3p 0 1 0
chr22:19019028|19019246 hsa-miR-6742-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6768-5p 0 1 0
chr22:19019028|19019246 hsa-miR-1292-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6796-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6732-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6798-5p 1 0 0
chr22:19019028|19019246 hsa-miR-7109-5p 1 0 0
chr22:19019028|19019246 hsa-miR-4783-5p 1 0 0
chr22:19019028|19019246 hsa-miR-4787-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6789-5p 1 0 0
chr22:19019028|19019246 hsa-miR-3162-5p 1 0 0
chr22:19019028|19019246 hsa-miR-5010-5p 1 1 0
chr22:19019028|19019246 hsa-miR-6851-3p 0 1 0
chr22:19019028|19019246 hsa-miR-3173-5p 0 1 0
chr22:19019028|19019246 hsa-miR-10400-5p 1 0 0
chr22:19019028|19019246 hsa-miR-4763-3p 1 0 0
chr22:19019028|19019246 hsa-miR-6778-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6812-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6816-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6870-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6726-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6743-5p 1 1 0
chr22:19019028|19019246 hsa-miR-6752-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6754-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6756-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6803-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6813-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6851-5p 1 0 0
chr22:19019028|19019246 hsa-miR-7111-5p 1 0 0
chr22:19019028|19019246 hsa-miR-3620-5p 1 0 0
chr22:19019028|19019246 hsa-miR-4728-5p 1 0 0
chr22:19019028|19019246 hsa-miR-4685-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6738-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6777-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6794-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6795-5p 0 1 0
chr22:19019028|19019246 hsa-miR-6846-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6848-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6889-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6885-5p 1 0 0
chr22:19019028|19019246 hsa-miR-939-5p 1 0 0
chr22:19019028|19019246 hsa-miR-3085-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6799-3p 0 1 0
chr22:19019028|19019246 hsa-miR-4665-5p 1 1 0
chr22:19019028|19019246 hsa-miR-6766-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6724-5p 1 0 0
chr22:19019028|19019246 hsa-miR-6791-5p 0 1 0
chr22:19019028|19019246 hsa-miR-6727-3p 0 1 0
chr22:19019028|19019246 hsa-miR-10400-3p 1 0 0
chr22:19019028|19019246 hsa-miR-6775-3p 0 1 0
chr22:19019028|19019246 hsa-miR-4769-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:19019028|19019246
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MPGACSSHPPVHFVCGISLLPLPLDGMAGPSYKYPDTWHQWCVKTTPRVFCDPASPVF
Nucleotide Sequence TTGCCTGGAGCCTGCTCATCCCATCCCCCAGTTCACTTTGTTTGTGGAATCTCCCTGTTGCCACTGCCCCTGGATGGAATGGCAGGGCCATCCTACAAGTACCCAGACACTTGGCATCAGTGGTGTGTCAAAACAACTCCAAGGGTTTTCTGTGATCCTGCAAGCCCTGTGTTC
CircID chr22:19019028|19019246
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MPVGLSCLEPAHPIPQFTLFVESPCCHCPWMEWQGHPTSTQTLGISGVSKQLQGFSVILQALC
Nucleotide Sequence CTGCCAGTAGGGCTCAGTTGCCTGGAGCCTGCTCATCCCATCCCCCAGTTCACTTTGTTTGTGGAATCTCCCTGTTGCCACTGCCCCTGGATGGAATGGCAGGGCCATCCTACAAGTACCCAGACACTTGGCATCAGTGGTGTGTCAAAACAACTCCAAGGGTTTTCTGTGATCCTGCAAGCCCTGTGT
CircID chr22:19019028|19019246
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MLIPSPSSLCLWNLPVATAPGWNGRAILQVPRHLASVVCQNNSKGFL
Nucleotide Sequence CTGCTCATCCCATCCCCCAGTTCACTTTGTTTGTGGAATCTCCCTGTTGCCACTGCCCCTGGATGGAATGGCAGGGCCATCCTACAAGTACCCAGACACTTGGCATCAGTGGTGTGTCAAAACAACTCCAAGGGTTTTCTGTGA
CircID chr22:19019028|19019246
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MMPSVWVLVGWPCHSIQGQWQQGDSTNKVNWGMG
Nucleotide Sequence CTGATGCCAAGTGTCTGGGTACTTGTAGGATGGCCCTGCCATTCCATCCAGGGGCAGTGGCAACAGGGAGATTCCACAAACAAAGTGAACTGGGGGATGGGATGA
CircID chr22:19019028|19019246
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MGTCRMALPFHPGAVATGRFHKQSELGDGMSRLQATEPYWQALGPRGRDR
Nucleotide Sequence CTGGGTACTTGTAGGATGGCCCTGCCATTCCATCCAGGGGCAGTGGCAACAGGGAGATTCCACAAACAAAGTGAACTGGGGGATGGGATGAGCAGGCTCCAGGCAACTGAGCCCTACTGGCAGGCCCTTGGCCCCCGGGGCCGGGACAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab