CircRNA Information

General Information
circRNA Basic Information
CircID chr22:19036821|19037004
Strand -
CircType exon
Host Gene ENSG00000070413.17;
Algorism CIRI2;
Sequence CCCGTTTCCTCACTGCCCCCTACGTGTCTGACCGGCCCCTAATGTTCCTCTGGTCCCCAAAGGAAGCGTCCCAGTCCCACACATCTCGTGCCAGCCACCCTGTCCCGCACACACAGTTCTGAGGCCTGGCAGGAATCCTCTGAGCTCTCAGGCTCAGGCCCGTGGGGGACTCTGCTGCGTGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:19036821|19037004 hsa-miR-34a-5p 0 0 1
chr22:19036821|19037004 hsa-miR-34a-3p 0 0 1
chr22:19036821|19037004 hsa-miR-449a 0 0 1
chr22:19036821|19037004 hsa-miR-564 0 0 1
chr22:19036821|19037004 hsa-miR-449b-5p 0 0 1
chr22:19036821|19037004 hsa-miR-449b-3p 0 0 1
chr22:19036821|19037004 hsa-miR-892a 0 0 1
chr22:19036821|19037004 hsa-miR-147b-5p 0 0 1
chr22:19036821|19037004 hsa-miR-147b-3p 0 0 1
chr22:19036821|19037004 hsa-miR-922 0 0 1
chr22:19036821|19037004 hsa-miR-1324 0 0 1
chr22:19036821|19037004 hsa-miR-486-3p 0 0 1
chr22:19036821|19037004 hsa-miR-361-3p 0 0 1
chr22:19036821|19037004 hsa-miR-576-3p 0 0 1
chr22:19036821|19037004 hsa-miR-34c-5p 0 0 1
chr22:19036821|19037004 hsa-miR-516a-3p 0 1 1
chr22:19036821|19037004 hsa-miR-644 0 0 1
chr22:19036821|19037004 hsa-miR-147 0 0 1
chr22:19036821|19037004 hsa-miR-608 1 0 0
chr22:19036821|19037004 hsa-miR-637 1 0 0
chr22:19036821|19037004 hsa-miR-762 1 0 0
chr22:19036821|19037004 hsa-miR-1293 1 0 0
chr22:19036821|19037004 hsa-miR-2278 1 0 0
chr22:19036821|19037004 hsa-miR-3169 1 0 0
chr22:19036821|19037004 hsa-miR-4298 1 0 0
chr22:19036821|19037004 hsa-miR-3652 1 0 0
chr22:19036821|19037004 hsa-miR-3916 0 1 0
chr22:19036821|19037004 hsa-miR-3936 1 0 0
chr22:19036821|19037004 hsa-miR-4462 1 0 0
chr22:19036821|19037004 hsa-miR-4498 1 1 0
chr22:19036821|19037004 hsa-miR-4505 1 0 0
chr22:19036821|19037004 hsa-miR-4508 1 0 0
chr22:19036821|19037004 hsa-miR-4539 1 0 0
chr22:19036821|19037004 hsa-miR-4648 0 1 0
chr22:19036821|19037004 hsa-miR-4651 1 0 0
chr22:19036821|19037004 hsa-miR-4656 1 0 0
chr22:19036821|19037004 hsa-miR-4688 1 0 0
chr22:19036821|19037004 hsa-miR-5090 1 0 0
chr22:19036821|19037004 hsa-miR-5787 1 0 0
chr22:19036821|19037004 hsa-miR-6081 1 0 0
chr22:19036821|19037004 hsa-miR-6085 1 0 0
chr22:19036821|19037004 hsa-miR-6131 1 0 0
chr22:19036821|19037004 hsa-miR-7704 1 0 0
chr22:19036821|19037004 hsa-miR-8089 1 1 0
chr22:19036821|19037004 hsa-miR-6840-3p 1 0 0
chr22:19036821|19037004 hsa-miR-4433a-3p 1 0 0
chr22:19036821|19037004 hsa-miR-6728-5p 1 0 0
chr22:19036821|19037004 hsa-miR-766-5p 1 1 0
chr22:19036821|19037004 hsa-miR-3622a-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6089 1 0 0
chr22:19036821|19037004 hsa-miR-4755-3p 0 1 0
chr22:19036821|19037004 hsa-miR-3928-3p 0 1 0
chr22:19036821|19037004 hsa-miR-6727-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4474-3p 1 0 0
chr22:19036821|19037004 hsa-miR-7845-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6748-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6796-5p 1 1 0
chr22:19036821|19037004 hsa-miR-185-3p 1 1 0
chr22:19036821|19037004 hsa-miR-6829-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6732-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6805-5p 0 1 0
chr22:19036821|19037004 hsa-miR-6782-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6810-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6850-5p 1 0 0
chr22:19036821|19037004 hsa-miR-5088-5p 0 1 0
chr22:19036821|19037004 hsa-miR-7109-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4640-5p 1 0 0
chr22:19036821|19037004 hsa-miR-92b-5p 1 0 0
chr22:19036821|19037004 hsa-miR-485-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6749-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6847-5p 0 1 0
chr22:19036821|19037004 hsa-miR-4743-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4446-3p 1 0 0
chr22:19036821|19037004 hsa-miR-6824-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6789-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6781-5p 1 0 0
chr22:19036821|19037004 hsa-miR-574-5p 1 0 0
chr22:19036821|19037004 hsa-miR-3191-3p 1 0 0
chr22:19036821|19037004 hsa-miR-5000-5p 0 1 0
chr22:19036821|19037004 hsa-miR-744-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6801-5p 1 1 0
chr22:19036821|19037004 hsa-miR-3670 0 1 0
chr22:19036821|19037004 hsa-miR-3144-5p 0 1 0
chr22:19036821|19037004 hsa-miR-1207-5p 1 1 0
chr22:19036821|19037004 hsa-miR-1233-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4763-3p 1 0 0
chr22:19036821|19037004 hsa-miR-6769b-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6778-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6893-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6775-5p 1 1 0
chr22:19036821|19037004 hsa-miR-5001-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6743-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6754-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6756-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6803-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6813-5p 1 0 0
chr22:19036821|19037004 hsa-miR-10401-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6808-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6879-5p 1 0 0
chr22:19036821|19037004 hsa-miR-3620-5p 1 0 0
chr22:19036821|19037004 hsa-miR-5196-5p 1 0 0
chr22:19036821|19037004 hsa-miR-1237-5p 0 1 0
chr22:19036821|19037004 hsa-miR-328-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4685-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4726-5p 1 1 0
chr22:19036821|19037004 hsa-miR-6846-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6848-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6883-5p 1 0 0
chr22:19036821|19037004 hsa-miR-3187-5p 1 0 0
chr22:19036821|19037004 hsa-miR-6885-5p 0 1 0
chr22:19036821|19037004 hsa-miR-4758-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4665-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4472 1 0 0
chr22:19036821|19037004 hsa-miR-3184-5p 1 0 0
chr22:19036821|19037004 hsa-miR-4722-3p 0 1 0
chr22:19036821|19037004 hsa-miR-9851-5p 0 1 0
chr22:19036821|19037004 hsa-miR-6859-5p 1 1 0
chr22:19036821|19037004 hsa-miR-4691-5p 0 1 0
chr22:19036821|19037004 hsa-miR-128-2-5p 0 1 0
chr22:19036821|19037004 hsa-miR-6715b-5p 1 0 0
chr22:19036821|19037004 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:19036821|19037004
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSRTHSSEAWQESSELSGSGPWGTLLRG
Nucleotide Sequence CTGTCCCGCACACACAGTTCTGAGGCCTGGCAGGAATCCTCTGAGCTCTCAGGCTCAGGCCCGTGGGGGACTCTGCTGCGTGGT
CircID chr22:19036821|19037004
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MVPKGSVPVPHISCQPPCPAHTVLRPGRNPLSSQAQARGGLCCVV
Nucleotide Sequence CTGGTCCCCAAAGGAAGCGTCCCAGTCCCACACATCTCGTGCCAGCCACCCTGTCCCGCACACACAGTTCTGAGGCCTGGCAGGAATCCTCTGAGCTCTCAGGCTCAGGCCCGTGGGGGACTCTGCTGCGTGGTC
CircID chr22:19036821|19037004
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MFLWSPKEASQSHTSRASHPVPHTQF
Nucleotide Sequence ATGTTCCTCTGGTCCCCAAAGGAAGCGTCCCAGTCCCACACATCTCGTGCCAGCCACCCTGTCCCGCACACACAGTTCTGA
CircID chr22:19036821|19037004
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MSLRAQRIPARPQNCVCGTGWLARDVWDWDASFGDQRNIRGRSDT
Nucleotide Sequence CTGAGCCTGAGAGCTCAGAGGATTCCTGCCAGGCCTCAGAACTGTGTGTGCGGGACAGGGTGGCTGGCACGAGATGTGTGGGACTGGGACGCTTCCTTTGGGGACCAGAGGAACATTAGGGGCCGGTCAGACACGTAG
CircID chr22:19036821|19037004
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MPGLRTVCAGQGGWHEMCGTGTLPLGTRGTLGAGQTRRGQ
Nucleotide Sequence CTGCCAGGCCTCAGAACTGTGTGTGCGGGACAGGGTGGCTGGCACGAGATGTGTGGGACTGGGACGCTTCCTTTGGGGACCAGAGGAACATTAGGGGCCGGTCAGACACGTAGGGGGCAGTGA
CircID chr22:19036821|19037004
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MCVRDRVAGTRCVGLGRFLWGPEEH
Nucleotide Sequence CTGTGTGTGCGGGACAGGGTGGCTGGCACGAGATGTGTGGGACTGGGACGCTTCCTTTGGGGACCAGAGGAACATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab