CircRNA Information

General Information
circRNA Basic Information
CircID chr22:19038377|19038483
Strand -
CircType exon
Host Gene ENSG00000070413.17;
Algorism CIRI2;
Sequence CCACTGCCTACGCCACACTGACGGTCCAGAGGCCCCCTCCTGAGGGCGGCCAGCAAGGGGCACTGTGGCAGCTCCCACTGTGCCTGTCCCAGACTGGGTCAGCAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:19038377|19038483 hsa-miR-22-5p 0 0 1
chr22:19038377|19038483 hsa-miR-22-3p 0 0 1
chr22:19038377|19038483 hsa-miR-34a-5p 0 0 1
chr22:19038377|19038483 hsa-miR-34a-3p 0 0 1
chr22:19038377|19038483 hsa-miR-370-5p 0 0 1
chr22:19038377|19038483 hsa-miR-370-3p 0 0 1
chr22:19038377|19038483 hsa-miR-422a 0 0 1
chr22:19038377|19038483 hsa-miR-449a 0 0 1
chr22:19038377|19038483 hsa-miR-558 0 0 1
chr22:19038377|19038483 hsa-miR-622 0 0 1
chr22:19038377|19038483 hsa-miR-449b-5p 0 0 1
chr22:19038377|19038483 hsa-miR-449b-3p 0 0 1
chr22:19038377|19038483 hsa-miR-920 0 1 1
chr22:19038377|19038483 hsa-miR-940 0 0 1
chr22:19038377|19038483 hsa-miR-628-5p 0 0 1
chr22:19038377|19038483 hsa-miR-1302 0 0 1
chr22:19038377|19038483 hsa-miR-34c-5p 0 0 1
chr22:19038377|19038483 hsa-miR-128 0 0 1
chr22:19038377|19038483 hsa-miR-378 0 0 1
chr22:19038377|19038483 hsa-miR-644 0 0 1
chr22:19038377|19038483 hsa-miR-378b 1 0 0
chr22:19038377|19038483 hsa-miR-548v 0 1 0
chr22:19038377|19038483 hsa-miR-4298 0 1 0
chr22:19038377|19038483 hsa-miR-4302 0 1 0
chr22:19038377|19038483 hsa-miR-4314 0 1 0
chr22:19038377|19038483 hsa-miR-4269 0 1 0
chr22:19038377|19038483 hsa-miR-378h 1 0 0
chr22:19038377|19038483 hsa-miR-6860 1 0 0
chr22:19038377|19038483 hsa-miR-9718 0 1 0
chr22:19038377|19038483 hsa-miR-93-3p 0 1 0
chr22:19038377|19038483 hsa-miR-6805-5p 1 0 0
chr22:19038377|19038483 hsa-miR-4793-3p 1 0 0
chr22:19038377|19038483 hsa-miR-92b-5p 1 0 0
chr22:19038377|19038483 hsa-miR-194-3p 0 1 0
chr22:19038377|19038483 hsa-miR-7850-5p 1 0 0
chr22:19038377|19038483 hsa-miR-4776-5p 1 0 0
chr22:19038377|19038483 hsa-miR-216a-3p 0 1 0
chr22:19038377|19038483 hsa-miR-4632-3p 0 1 0
chr22:19038377|19038483 hsa-miR-1233-5p 0 1 0
chr22:19038377|19038483 hsa-miR-6743-5p 1 0 0
chr22:19038377|19038483 hsa-miR-6848-5p 1 0 0
chr22:19038377|19038483 hsa-miR-3187-5p 1 0 0
chr22:19038377|19038483 hsa-miR-939-5p 1 0 0
chr22:19038377|19038483 hsa-miR-5591-5p 0 1 0
chr22:19038377|19038483 hsa-miR-6893-3p 0 1 0
chr22:19038377|19038483 hsa-miR-4757-5p 0 1 0
chr22:19038377|19038483 hsa-miR-3130-5p 0 1 0
chr22:19038377|19038483 hsa-miR-4482-5p 0 1 0
chr22:19038377|19038483 hsa-miR-3064-3p 0 1 0
chr22:19038377|19038483 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr22:19038377|19038483
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MTVQRPPPEGGQQGALWQLPLCLSQTGSAG
Nucleotide Sequence CTGACGGTCCAGAGGCCCCCTCCTGAGGGCGGCCAGCAAGGGGCACTGTGGCAGCTCCCACTGTGCCTGTCCCAGACTGGGTCAGCAGGT

CircID chr22:19038377|19038483
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MGQAQWELPQCPLLAALRRGPLDRQCGVGS
Nucleotide Sequence CTGGGACAGGCACAGTGGGAGCTGCCACAGTGCCCCTTGCTGGCCGCCCTCAGGAGGGGGCCTCTGGACCGTCAGTGTGGCGTAGGCAGT

CircID chr22:19038377|19038483
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence LLTQSGTGTVGAATVPLAGRPQEGASGPSVWRRQW
Nucleotide Sequence CTGCTGACCCAGTCTGGGACAGGCACAGTGGGAGCTGCCACAGTGCCCCTTGCTGGCCGCCCTCAGGAGGGGGCCTCTGGACCGTCAGTGTGGCGTAGGCAGTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites