CircRNA Information

General Information
circRNA Basic Information
CircID chr22:19176869|19177181
Strand +
CircType exon
Host Gene ENSG00000100075.8;
Algorism CIRI2;
Sequence CTCCCCAAACCCCAAGTACAGAGGATTCTTCCACGGGGTTAGGGAGATTGTGCGGGAACAAGGTGAGCCACTCGACCTTCCTGATAGGGCTCAGGGACCTGGGCCAGGGTGGGAAGGGCCTGCACCTCCCATCCTGCCTTGGGCTTTGTGCAACACCCACCCCCCACACACACCAATTCCCAACCGGGGCCTGAGAGGCTGCAGGGTAACCCCGTGCCTGCCTTCCCGCAGGGCTGAAGGGGACGTACCAGGGCCTCACAGCCACTGTCCTGAAGCAGGGCTCGAACCAGGCCATCCGCTTCTTCGTCATGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:19176869|19177181 hsa-miR-10a-5p 0 0 1
chr22:19176869|19177181 hsa-miR-10a-3p 0 0 1
chr22:19176869|19177181 hsa-miR-10b-5p 0 0 1
chr22:19176869|19177181 hsa-miR-10b-3p 0 0 1
chr22:19176869|19177181 hsa-miR-493-5p 0 0 1
chr22:19176869|19177181 hsa-miR-493-3p 0 0 1
chr22:19176869|19177181 hsa-miR-564 0 1 1
chr22:19176869|19177181 hsa-miR-608 1 1 1
chr22:19176869|19177181 hsa-miR-609 0 0 1
chr22:19176869|19177181 hsa-miR-890 0 0 1
chr22:19176869|19177181 hsa-miR-873-5p 0 0 1
chr22:19176869|19177181 hsa-miR-873-3p 0 0 1
chr22:19176869|19177181 hsa-miR-939-5p 0 0 1
chr22:19176869|19177181 hsa-miR-939-3p 0 0 1
chr22:19176869|19177181 hsa-miR-940 0 0 1
chr22:19176869|19177181 hsa-miR-1291 0 1 1
chr22:19176869|19177181 hsa-miR-1294 0 0 1
chr22:19176869|19177181 hsa-miR-1266-5p 0 0 1
chr22:19176869|19177181 hsa-miR-1266-3p 0 0 1
chr22:19176869|19177181 hsa-miR-1225-3p 0 0 1
chr22:19176869|19177181 hsa-miR-491-5p 0 0 1
chr22:19176869|19177181 hsa-miR-1184 0 1 1
chr22:19176869|19177181 hsa-miR-1224-3p 0 0 1
chr22:19176869|19177181 hsa-miR-409-5p 0 1 1
chr22:19176869|19177181 hsa-miR-188-3p 0 0 1
chr22:19176869|19177181 hsa-miR-125a-5p 0 1 1
chr22:19176869|19177181 hsa-miR-1260 0 0 1
chr22:19176869|19177181 hsa-miR-1280 0 0 1
chr22:19176869|19177181 hsa-miR-1233 0 0 1
chr22:19176869|19177181 hsa-miR-125b 0 0 1
chr22:19176869|19177181 hsa-miR-7 0 0 1
chr22:19176869|19177181 hsa-miR-644 0 0 1
chr22:19176869|19177181 hsa-miR-24 0 0 1
chr22:19176869|19177181 hsa-miR-147 0 0 1
chr22:19176869|19177181 hsa-miR-1260a 0 1 0
chr22:19176869|19177181 hsa-miR-3147 1 0 0
chr22:19176869|19177181 hsa-miR-3155a 1 0 0
chr22:19176869|19177181 hsa-miR-1260b 0 1 0
chr22:19176869|19177181 hsa-miR-3185 1 1 0
chr22:19176869|19177181 hsa-miR-4322 1 0 0
chr22:19176869|19177181 hsa-miR-4269 0 1 0
chr22:19176869|19177181 hsa-miR-4281 1 0 0
chr22:19176869|19177181 hsa-miR-3650 1 0 0
chr22:19176869|19177181 hsa-miR-3714 0 1 0
chr22:19176869|19177181 hsa-miR-3916 1 0 0
chr22:19176869|19177181 hsa-miR-4447 1 1 0
chr22:19176869|19177181 hsa-miR-4449 1 0 0
chr22:19176869|19177181 hsa-miR-4455 1 0 0
chr22:19176869|19177181 hsa-miR-3689c 0 1 0
chr22:19176869|19177181 hsa-miR-3155b 1 0 0
chr22:19176869|19177181 hsa-miR-2392 0 1 0
chr22:19176869|19177181 hsa-miR-4514 0 1 0
chr22:19176869|19177181 hsa-miR-4651 1 1 0
chr22:19176869|19177181 hsa-miR-4734 0 1 0
chr22:19176869|19177181 hsa-miR-5693 0 1 0
chr22:19176869|19177181 hsa-miR-6125 0 1 0
chr22:19176869|19177181 hsa-miR-7974 1 1 0
chr22:19176869|19177181 hsa-miR-12120 1 0 0
chr22:19176869|19177181 hsa-miR-92a-1-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6747-5p 1 0 0
chr22:19176869|19177181 hsa-miR-4726-3p 0 1 0
chr22:19176869|19177181 hsa-miR-6765-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6857-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6720-5p 1 0 0
chr22:19176869|19177181 hsa-miR-1233-3p 1 1 0
chr22:19176869|19177181 hsa-miR-6799-5p 0 1 0
chr22:19176869|19177181 hsa-miR-139-3p 1 0 0
chr22:19176869|19177181 hsa-miR-3622a-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6089 1 0 0
chr22:19176869|19177181 hsa-miR-6867-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6875-3p 0 1 0
chr22:19176869|19177181 hsa-miR-6759-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6742-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6871-5p 1 1 0
chr22:19176869|19177181 hsa-miR-3151-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6748-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6796-5p 1 0 0
chr22:19176869|19177181 hsa-miR-4725-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6732-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6782-5p 1 0 0
chr22:19176869|19177181 hsa-miR-30b-3p 1 1 0
chr22:19176869|19177181 hsa-miR-7109-5p 1 1 0
chr22:19176869|19177181 hsa-miR-1226-5p 1 0 0
chr22:19176869|19177181 hsa-miR-193b-5p 0 1 0
chr22:19176869|19177181 hsa-miR-4787-5p 1 0 0
chr22:19176869|19177181 hsa-miR-3162-5p 1 0 0
chr22:19176869|19177181 hsa-miR-7156-3p 0 1 0
chr22:19176869|19177181 hsa-miR-6813-3p 0 1 0
chr22:19176869|19177181 hsa-miR-1910-5p 1 0 0
chr22:19176869|19177181 hsa-miR-500a-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6814-5p 0 1 0
chr22:19176869|19177181 hsa-miR-501-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6886-3p 0 1 0
chr22:19176869|19177181 hsa-miR-6851-3p 0 1 0
chr22:19176869|19177181 hsa-miR-3620-3p 0 1 0
chr22:19176869|19177181 hsa-miR-670-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6734-3p 0 1 0
chr22:19176869|19177181 hsa-miR-1249-3p 0 1 0
chr22:19176869|19177181 hsa-miR-3200-3p 0 1 0
chr22:19176869|19177181 hsa-miR-1233-5p 1 0 0
chr22:19176869|19177181 hsa-miR-1273h-5p 1 1 0
chr22:19176869|19177181 hsa-miR-3689b-3p 0 1 0
chr22:19176869|19177181 hsa-miR-4763-3p 1 0 0
chr22:19176869|19177181 hsa-miR-6769b-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6778-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6893-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6726-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6752-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6756-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6769a-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6803-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6819-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6842-5p 1 1 0
chr22:19176869|19177181 hsa-miR-10401-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6751-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6763-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6779-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6808-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6879-5p 0 1 0
chr22:19176869|19177181 hsa-miR-7111-5p 1 0 0
chr22:19176869|19177181 hsa-miR-3127-3p 0 1 0
chr22:19176869|19177181 hsa-miR-5196-5p 0 1 0
chr22:19176869|19177181 hsa-miR-1237-5p 1 0 0
chr22:19176869|19177181 hsa-miR-328-5p 1 0 0
chr22:19176869|19177181 hsa-miR-3689a-3p 0 1 0
chr22:19176869|19177181 hsa-miR-4632-5p 0 1 0
chr22:19176869|19177181 hsa-miR-4745-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6777-5p 0 1 0
chr22:19176869|19177181 hsa-miR-6795-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6846-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6848-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6883-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6887-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6885-5p 1 0 0
chr22:19176869|19177181 hsa-miR-1238-5p 1 0 0
chr22:19176869|19177181 hsa-miR-4758-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6799-3p 0 1 0
chr22:19176869|19177181 hsa-miR-4665-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6855-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6877-3p 0 1 0
chr22:19176869|19177181 hsa-miR-4747-5p 0 1 0
chr22:19176869|19177181 hsa-miR-4472 1 1 0
chr22:19176869|19177181 hsa-miR-6766-5p 0 1 0
chr22:19176869|19177181 hsa-miR-3689d 0 1 0
chr22:19176869|19177181 hsa-miR-6790-5p 1 0 0
chr22:19176869|19177181 hsa-miR-6791-5p 1 1 0
chr22:19176869|19177181 hsa-miR-6756-3p 0 1 0
chr22:19176869|19177181 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:19176869|19177181
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MGFVQHPPPTHTNSQPGPERLQGNPVPAFPQG
Nucleotide Sequence TTGGGCTTTGTGCAACACCCACCCCCCACACACACCAATTCCCAACCGGGGCCTGAGAGGCTGCAGGGTAACCCCGTGCCTGCCTTCCCGCAGGGCTGA
CircID chr22:19176869|19177181
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MPWALCNTHPPHTPIPNRGLRGCRVTPCLPSRRAEGDVPGPHSHCPEAGLEPGHPLLRHD
Nucleotide Sequence CTGCCTTGGGCTTTGTGCAACACCCACCCCCCACACACACCAATTCCCAACCGGGGCCTGAGAGGCTGCAGGGTAACCCCGTGCCTGCCTTCCCGCAGGGCTGAAGGGGACGTACCAGGGCCTCACAGCCACTGTCCTGAAGCAGGGCTCGAACCAGGCCATCCGCTTCTTCGTCATGAC
CircID chr22:19176869|19177181
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MCGNKVSHSTFLIGLRDLGQGGKGLHLPSCLGLCATPTPHTHQFPTGA
Nucleotide Sequence TTGTGCGGGAACAAGGTGAGCCACTCGACCTTCCTGATAGGGCTCAGGGACCTGGGCCAGGGTGGGAAGGGCCTGCACCTCCCATCCTGCCTTGGGCTTTGTGCAACACCCACCCCCCACACACACCAATTCCCAACCGGGGCCTGA
CircID chr22:19176869|19177181
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MKGTYQGLTATVLKQGSNQAIRFFVM
Nucleotide Sequence CTGAAGGGGACGTACCAGGGCCTCACAGCCACTGTCCTGAAGCAGGGCTCGAACCAGGCCATCCGCTTCTTCGTCATG
CircID chr22:19176869|19177181
ORF Type ORF5
Protein Length 103
Nucleotide Length 309
Protein Sequence MTKKRMAWFEPCFRTVAVRPWYVPFSPAGRQARGYPAASQAPVGNWCVWGVGVAQSPRQDGRCRPFPPWPRSLSPIRKVEWLTLFPHNLPNPVEESSVLGVWG
Nucleotide Sequence ATGACGAAGAAGCGGATGGCCTGGTTCGAGCCCTGCTTCAGGACAGTGGCTGTGAGGCCCTGGTACGTCCCCTTCAGCCCTGCGGGAAGGCAGGCACGGGGTTACCCTGCAGCCTCTCAGGCCCCGGTTGGGAATTGGTGTGTGTGGGGGGTGGGTGTTGCACAAAGCCCAAGGCAGGATGGGAGGTGCAGGCCCTTCCCACCCTGGCCCAGGTCCCTGAGCCCTATCAGGAAGGTCGAGTGGCTCACCTTGTTCCCGCACAATCTCCCTAACCCCGTGGAAGAATCCTCTGTACTTGGGGTTTGGGGA
CircID chr22:19176869|19177181
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MREGRHGVTLQPLRPRLGIGVCGGWVLHKAQGRMGGAGPSHPGPGP
Nucleotide Sequence CTGCGGGAAGGCAGGCACGGGGTTACCCTGCAGCCTCTCAGGCCCCGGTTGGGAATTGGTGTGTGTGGGGGGTGGGTGTTGCACAAAGCCCAAGGCAGGATGGGAGGTGCAGGCCCTTCCCACCCTGGCCCAGGTCCCTGA
CircID chr22:19176869|19177181
ORF Type ORF7
Protein Length 83
Nucleotide Length 252
Protein Sequence MVRALLQDSGCEALVRPLQPCGKAGTGLPCSLSGPGWELVCVGGGCCTKPKAGWEVQALPTLAQVPEPYQEGRVAHLVPAQSP
Nucleotide Sequence CTGGTTCGAGCCCTGCTTCAGGACAGTGGCTGTGAGGCCCTGGTACGTCCCCTTCAGCCCTGCGGGAAGGCAGGCACGGGGTTACCCTGCAGCCTCTCAGGCCCCGGTTGGGAATTGGTGTGTGTGGGGGGTGGGTGTTGCACAAAGCCCAAGGCAGGATGGGAGGTGCAGGCCCTTCCCACCCTGGCCCAGGTCCCTGAGCCCTATCAGGAAGGTCGAGTGGCTCACCTTGTTCCCGCACAATCTCCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab