CircRNA Information

General Information
circRNA Basic Information
CircID chr22:19848326|19848488
Strand +
CircType exon
Host Gene ENSG00000215012.7;
Algorism CIRI2;
Sequence AGCTCCTTTCAGAGTGGCTTTGTTGCCAGCTGCTGCAGCACCTGCTTTCAGACAGATGATGACCAAGCTGCTTTCCTGCTGGGGGAAGGAGGCATTCCCCCTGGGTTGTTTTTCTCTTCTGGCCCCCACACACTGGCAGACCCGAAGGCAGGGTGCTCAGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:19848326|19848488 hsa-miR-107 0 0 1
chr22:19848326|19848488 hsa-miR-214-5p 0 0 1
chr22:19848326|19848488 hsa-miR-214-3p 0 0 1
chr22:19848326|19848488 hsa-miR-346 0 0 1
chr22:19848326|19848488 hsa-miR-488-5p 0 0 1
chr22:19848326|19848488 hsa-miR-488-3p 0 0 1
chr22:19848326|19848488 hsa-miR-625-5p 0 0 1
chr22:19848326|19848488 hsa-miR-625-3p 0 0 1
chr22:19848326|19848488 hsa-miR-646 0 0 1
chr22:19848326|19848488 hsa-miR-708-5p 0 0 1
chr22:19848326|19848488 hsa-miR-708-3p 0 0 1
chr22:19848326|19848488 hsa-miR-1200 0 1 1
chr22:19848326|19848488 hsa-miR-491-5p 0 0 1
chr22:19848326|19848488 hsa-miR-199a-5p 0 0 1
chr22:19848326|19848488 hsa-miR-1184 0 1 1
chr22:19848326|19848488 hsa-miR-361-3p 0 0 1
chr22:19848326|19848488 hsa-miR-28-5p 0 0 1
chr22:19848326|19848488 hsa-miR-1207-3p 0 0 1
chr22:19848326|19848488 hsa-miR-199b-5p 0 0 1
chr22:19848326|19848488 hsa-miR-103 0 0 1
chr22:19848326|19848488 hsa-miR-644 0 0 1
chr22:19848326|19848488 hsa-miR-147 0 0 1
chr22:19848326|19848488 hsa-miR-1202 1 0 0
chr22:19848326|19848488 hsa-miR-3128 0 1 0
chr22:19848326|19848488 hsa-miR-3137 0 1 0
chr22:19848326|19848488 hsa-miR-3665 1 1 0
chr22:19848326|19848488 hsa-miR-4453 1 0 0
chr22:19848326|19848488 hsa-miR-4526 1 0 0
chr22:19848326|19848488 hsa-miR-4530 0 1 0
chr22:19848326|19848488 hsa-miR-4538 0 1 0
chr22:19848326|19848488 hsa-miR-4644 0 1 0
chr22:19848326|19848488 hsa-miR-196a-3p 0 1 0
chr22:19848326|19848488 hsa-miR-6747-3p 0 1 0
chr22:19848326|19848488 hsa-miR-6867-5p 1 1 0
chr22:19848326|19848488 hsa-miR-4722-5p 1 0 0
chr22:19848326|19848488 hsa-miR-1915-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6796-5p 0 1 0
chr22:19848326|19848488 hsa-miR-6798-5p 0 1 0
chr22:19848326|19848488 hsa-miR-185-5p 0 1 0
chr22:19848326|19848488 hsa-miR-4783-3p 1 0 0
chr22:19848326|19848488 hsa-miR-4640-5p 1 1 0
chr22:19848326|19848488 hsa-miR-3065-5p 0 1 0
chr22:19848326|19848488 hsa-miR-6871-3p 0 1 0
chr22:19848326|19848488 hsa-miR-4766-5p 0 1 0
chr22:19848326|19848488 hsa-miR-3620-3p 0 1 0
chr22:19848326|19848488 hsa-miR-6734-3p 0 1 0
chr22:19848326|19848488 hsa-miR-6769b-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6756-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6803-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6797-5p 1 0 0
chr22:19848326|19848488 hsa-miR-328-5p 1 0 0
chr22:19848326|19848488 hsa-miR-4726-5p 1 1 0
chr22:19848326|19848488 hsa-miR-6846-5p 1 1 0
chr22:19848326|19848488 hsa-miR-6848-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6845-5p 1 1 0
chr22:19848326|19848488 hsa-miR-4758-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6791-3p 0 1 0
chr22:19848326|19848488 hsa-miR-4747-5p 1 0 0
chr22:19848326|19848488 hsa-miR-6762-5p 1 0 0
chr22:19848326|19848488 hsa-miR-3619-5p 0 1 0
chr22:19848326|19848488 hsa-miR-6781-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:19848326|19848488
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLGEGGIPPGLFFSSGPHTLADPKAGCSG
Nucleotide Sequence CTGCTGGGGGAAGGAGGCATTCCCCCTGGGTTGTTTTTCTCTTCTGGCCCCCACACACTGGCAGACCCGAAGGCAGGGTGCTCAGGA
CircID chr22:19848326|19848488
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MLPAAAAPAFRQMMTKLLSCWGKEAFPLGCFSLLAPTHWQTRRQGAQE
Nucleotide Sequence TTGTTGCCAGCTGCTGCAGCACCTGCTTTCAGACAGATGATGACCAAGCTGCTTTCCTGCTGGGGGAAGGAGGCATTCCCCCTGGGTTGTTTTTCTCTTCTGGCCCCCACACACTGGCAGACCCGAAGGCAGGGTGCTCAGGAG
CircID chr22:19848326|19848488
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MSTLPSGLPVCGGQKRKTTQGECLLPPAGKQLGHHLSESRCCSSWQQSHSERS
Nucleotide Sequence CTGAGCACCCTGCCTTCGGGTCTGCCAGTGTGTGGGGGCCAGAAGAGAAAAACAACCCAGGGGGAATGCCTCCTTCCCCCAGCAGGAAAGCAGCTTGGTCATCATCTGTCTGAAAGCAGGTGCTGCAGCAGCTGGCAACAAAGCCACTCTGAAAGGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab