CircRNA Information

General Information
circRNA Basic Information
CircID chr22:20064953|20065101
Strand +
CircType exon
Host Gene ENSG00000183597.14;
Algorism CIRI2;
Sequence CTGTGTGTGTGTGTCTGTGCAACTGTGCATGTGTGCACATGTGTAGCACACCTGTGCACGTACATGTGCCTGTGTCGGTGTCCATGTATATGGCTTGCATGTGTGTGCTTGTGCACACGCAGGAGTGTATGTGTGTGCCATGTGAGTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:20064953|20065101 hsa-miR-183-5p 0 0 1
chr22:20064953|20065101 hsa-miR-183-3p 0 0 1
chr22:20064953|20065101 hsa-miR-221-5p 0 0 1
chr22:20064953|20065101 hsa-miR-221-3p 0 0 1
chr22:20064953|20065101 hsa-miR-222-5p 0 0 1
chr22:20064953|20065101 hsa-miR-222-3p 0 0 1
chr22:20064953|20065101 hsa-miR-552-5p 0 0 1
chr22:20064953|20065101 hsa-miR-552-3p 0 0 1
chr22:20064953|20065101 hsa-miR-483-3p 0 0 1
chr22:20064953|20065101 hsa-miR-297 0 1 0
chr22:20064953|20065101 hsa-miR-466 0 1 0
chr22:20064953|20065101 hsa-miR-4269 0 1 0
chr22:20064953|20065101 hsa-miR-4643 0 1 0
chr22:20064953|20065101 hsa-miR-5689 0 1 0
chr22:20064953|20065101 hsa-miR-8485 0 1 0
chr22:20064953|20065101 hsa-miR-585-5p 0 1 0
chr22:20064953|20065101 hsa-miR-6767-5p 0 1 0
chr22:20064953|20065101 hsa-miR-3177-5p 0 1 0
chr22:20064953|20065101 hsa-miR-942-3p 0 1 0
chr22:20064953|20065101 hsa-miR-4789-3p 0 1 0
chr22:20064953|20065101 hsa-miR-5197-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:20064953|20065101
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence LCVCVCATVHVCTCVAHLCTYMCLCRCPCIWLACVCLCTRRSVCVCHVS
Nucleotide Sequence CTGTGTGTGTGTGTCTGTGCAACTGTGCATGTGTGCACATGTGTAGCACACCTGTGCACGTACATGTGCCTGTGTCGGTGTCCATGTATATGGCTTGCATGTGTGTGCTTGTGCACACGCAGGAGTGTATGTGTGTGCCATGTGAGT
CircID chr22:20064953|20065101
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MCNCACVHMCSTPVHVHVPVSVSMYMACMCVLVHTQECMCVPCEC
Nucleotide Sequence CTGTGCAACTGTGCATGTGTGCACATGTGTAGCACACCTGTGCACGTACATGTGCCTGTGTCGGTGTCCATGTATATGGCTTGCATGTGTGTGCTTGTGCACACGCAGGAGTGTATGTGTGTGCCATGTGAGTGC
CircID chr22:20064953|20065101
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MRVHKHTHASHIHGHRHRHMYVHRCATHVHTCTVAQTHTH
Nucleotide Sequence CTGCGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACAGGCACATGTACGTGCACAGGTGTGCTACACATGTGCACACATGCACAGTTGCACAGACACACACACAC
CircID chr22:20064953|20065101
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MQAIYMDTDTGTCTCTGVLHMCTHAQLHRHTHT
Nucleotide Sequence ATGCAAGCCATATACATGGACACCGACACAGGCACATGTACGTGCACAGGTGTGCTACACATGTGCACACATGCACAGTTGCACAGACACACACACACA
CircID chr22:20064953|20065101
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MAHTYTPACAQAHTCKPYTWTPTQAHVRAQVCYTCAHMHSCTDTHTQ
Nucleotide Sequence ATGGCACACACATACACTCCTGCGTGTGCACAAGCACACACATGCAAGCCATATACATGGACACCGACACAGGCACATGTACGTGCACAGGTGTGCTACACATGTGCACACATGCACAGTTGCACAGACACACACACACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab