CircRNA Information

General Information
circRNA Basic Information
CircID chr22:20934024|20934152
Strand -
CircType exon
Host Gene ENSG00000099942.11;
Algorism CIRI2;
Sequence CACACGGAAAGCATGGAAATAGGAATTCCAACAGTTATGGGATCCCAGAACCTGCTCATGCATACGCTCAACCTCAGACCACAACTCCTCTACCTGCAGTTTCCGGTTCTCCTGGGGCAGCAATCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:20934024|20934152 hsa-miR-586 0 0 1
chr22:20934024|20934152 hsa-miR-587 0 0 1
chr22:20934024|20934152 hsa-miR-589-5p 0 0 1
chr22:20934024|20934152 hsa-miR-589-3p 0 0 1
chr22:20934024|20934152 hsa-miR-638 0 0 1
chr22:20934024|20934152 hsa-miR-657 0 1 1
chr22:20934024|20934152 hsa-miR-877-5p 0 0 1
chr22:20934024|20934152 hsa-miR-877-3p 0 0 1
chr22:20934024|20934152 hsa-miR-665 0 0 1
chr22:20934024|20934152 hsa-miR-1205 0 0 1
chr22:20934024|20934152 hsa-miR-337-3p 0 0 1
chr22:20934024|20934152 hsa-miR-324-3p 0 0 1
chr22:20934024|20934152 hsa-miR-769-3p 0 1 1
chr22:20934024|20934152 hsa-miR-509-3-5p 0 0 1
chr22:20934024|20934152 hsa-miR-509-5p 0 0 1
chr22:20934024|20934152 hsa-miR-450b-3p 0 0 1
chr22:20934024|20934152 hsa-miR-571 1 0 0
chr22:20934024|20934152 hsa-miR-762 1 0 0
chr22:20934024|20934152 hsa-miR-920 1 0 0
chr22:20934024|20934152 hsa-miR-1183 1 0 0
chr22:20934024|20934152 hsa-miR-3125 1 0 0
chr22:20934024|20934152 hsa-miR-3132 1 0 0
chr22:20934024|20934152 hsa-miR-3147 1 0 0
chr22:20934024|20934152 hsa-miR-3621 1 0 0
chr22:20934024|20934152 hsa-miR-3665 1 0 0
chr22:20934024|20934152 hsa-miR-3916 1 0 0
chr22:20934024|20934152 hsa-miR-4451 1 0 0
chr22:20934024|20934152 hsa-miR-4496 1 1 0
chr22:20934024|20934152 hsa-miR-4534 1 0 0
chr22:20934024|20934152 hsa-miR-4656 1 0 0
chr22:20934024|20934152 hsa-miR-4706 1 0 0
chr22:20934024|20934152 hsa-miR-4734 1 0 0
chr22:20934024|20934152 hsa-miR-4751 0 1 0
chr22:20934024|20934152 hsa-miR-4784 1 0 0
chr22:20934024|20934152 hsa-miR-5194 1 0 0
chr22:20934024|20934152 hsa-miR-6086 1 0 0
chr22:20934024|20934152 hsa-miR-12114 1 0 0
chr22:20934024|20934152 hsa-miR-12119 1 1 0
chr22:20934024|20934152 hsa-miR-4433b-3p 1 0 0
chr22:20934024|20934152 hsa-miR-152-5p 0 1 0
chr22:20934024|20934152 hsa-miR-7106-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6825-5p 1 0 0
chr22:20934024|20934152 hsa-miR-219a-1-3p 1 0 0
chr22:20934024|20934152 hsa-miR-6799-5p 1 0 0
chr22:20934024|20934152 hsa-miR-766-5p 1 0 0
chr22:20934024|20934152 hsa-miR-4768-3p 0 1 0
chr22:20934024|20934152 hsa-miR-3192-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6880-5p 1 0 0
chr22:20934024|20934152 hsa-miR-7847-3p 1 0 0
chr22:20934024|20934152 hsa-miR-4722-5p 1 0 0
chr22:20934024|20934152 hsa-miR-7160-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6806-5p 1 0 0
chr22:20934024|20934152 hsa-miR-197-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6871-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6798-5p 1 0 0
chr22:20934024|20934152 hsa-miR-3150b-3p 1 0 0
chr22:20934024|20934152 hsa-miR-6835-5p 1 0 0
chr22:20934024|20934152 hsa-miR-4738-3p 0 1 0
chr22:20934024|20934152 hsa-miR-4732-5p 1 0 0
chr22:20934024|20934152 hsa-miR-4713-3p 0 1 0
chr22:20934024|20934152 hsa-miR-6824-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6886-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6801-5p 1 0 0
chr22:20934024|20934152 hsa-miR-4746-5p 1 0 0
chr22:20934024|20934152 hsa-miR-875-3p 1 0 0
chr22:20934024|20934152 hsa-miR-4763-3p 1 0 0
chr22:20934024|20934152 hsa-miR-6726-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6752-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6803-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6813-5p 1 0 0
chr22:20934024|20934152 hsa-miR-7110-5p 1 0 0
chr22:20934024|20934152 hsa-miR-11181-3p 1 0 0
chr22:20934024|20934152 hsa-miR-6763-5p 1 0 0
chr22:20934024|20934152 hsa-miR-4728-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6889-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6831-5p 1 1 0
chr22:20934024|20934152 hsa-miR-939-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6511b-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6855-5p 1 0 0
chr22:20934024|20934152 hsa-miR-10398-3p 1 0 0
chr22:20934024|20934152 hsa-miR-6790-5p 1 0 0
chr22:20934024|20934152 hsa-miR-6859-5p 1 0 0
chr22:20934024|20934152 hsa-miR-619-5p 0 1 0
chr22:20934024|20934152 hsa-miR-6506-5p 0 1 0
chr22:20934024|20934152 hsa-miR-7153-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:20934024|20934152
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MEIGIPTVMGSQNLLMHTLNLRPQLLYLQFPVLLGQQSP
Nucleotide Sequence ATGGAAATAGGAATTCCAACAGTTATGGGATCCCAGAACCTGCTCATGCATACGCTCAACCTCAGACCACAACTCCTCTACCTGCAGTTTCCGGTTCTCCTGGGGCAGCAATCACCC
CircID chr22:20934024|20934152
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MLPQENRKLQVEELWSEVERMHEQVLGSHNCWNSYFHAFRV
Nucleotide Sequence TTGCTGCCCCAGGAGAACCGGAAACTGCAGGTAGAGGAGTTGTGGTCTGAGGTTGAGCGTATGCATGAGCAGGTTCTGGGATCCCATAACTGTTGGAATTCCTATTTCCATGCTTTCCGTGTG
CircID chr22:20934024|20934152
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MRLSVCMSRFWDPITVGIPISMLSV
Nucleotide Sequence CTGAGGTTGAGCGTATGCATGAGCAGGTTCTGGGATCCCATAACTGTTGGAATTCCTATTTCCATGCTTTCCGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab