CircRNA Information

General Information
circRNA Basic Information
CircID chr22:23891997|23892205
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGGAGGGTTGGCGGAGGCTCACAGGGACCGGGTTACCCCAGGGCCTTGTGACAGTACTACCCCTAGTATCAGAGGAGACTGTCATTGGCATTTAGGCCACTTGGTGCTCATAACACCTCTATGTCAGGTGAACACTATTGTCATCCCCAAATTACAGATGGGGAAAGTGAGCCAAATGTCCATGCTAGTAAGAGGCAAATCATATCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:23891997|23892205 hsa-miR-29a-5p 0 0 1
chr22:23891997|23892205 hsa-miR-29a-3p 0 0 1
chr22:23891997|23892205 hsa-miR-29c-5p 0 0 1
chr22:23891997|23892205 hsa-miR-29c-3p 0 0 1
chr22:23891997|23892205 hsa-miR-376c-5p 0 0 1
chr22:23891997|23892205 hsa-miR-376c-3p 0 0 1
chr22:23891997|23892205 hsa-miR-190b-5p 0 0 1
chr22:23891997|23892205 hsa-miR-190b-3p 0 0 1
chr22:23891997|23892205 hsa-miR-1291 0 0 1
chr22:23891997|23892205 hsa-miR-1278 0 1 1
chr22:23891997|23892205 hsa-miR-513b-5p 0 0 1
chr22:23891997|23892205 hsa-miR-513b-3p 0 0 1
chr22:23891997|23892205 hsa-miR-339-5p 1 0 1
chr22:23891997|23892205 hsa-miR-556-5p 0 0 1
chr22:23891997|23892205 hsa-miR-1274a 0 0 1
chr22:23891997|23892205 hsa-miR-1274b 0 0 1
chr22:23891997|23892205 hsa-miR-24 0 0 1
chr22:23891997|23892205 hsa-miR-29b 0 0 1
chr22:23891997|23892205 hsa-miR-190 0 0 1
chr22:23891997|23892205 hsa-miR-608 0 1 0
chr22:23891997|23892205 hsa-miR-637 1 0 0
chr22:23891997|23892205 hsa-miR-4284 0 1 0
chr22:23891997|23892205 hsa-miR-4462 1 0 0
chr22:23891997|23892205 hsa-miR-134-3p 1 0 0
chr22:23891997|23892205 hsa-miR-7155-5p 0 1 0
chr22:23891997|23892205 hsa-miR-3663-3p 0 1 0
chr22:23891997|23892205 hsa-miR-6744-5p 0 1 0
chr22:23891997|23892205 hsa-miR-3677-5p 0 1 0
chr22:23891997|23892205 hsa-miR-3189-5p 0 1 0
chr22:23891997|23892205 hsa-miR-7109-3p 0 1 0
chr22:23891997|23892205 hsa-miR-6878-3p 1 0 0
chr22:23891997|23892205 hsa-miR-146b-3p 0 1 0
chr22:23891997|23892205 hsa-miR-4664-3p 1 0 0
chr22:23891997|23892205 hsa-miR-1914-5p 1 0 0
chr22:23891997|23892205 hsa-miR-328-3p 1 0 0
chr22:23891997|23892205 hsa-miR-4746-5p 0 1 0
chr22:23891997|23892205 hsa-miR-584-5p 0 1 0
chr22:23891997|23892205 hsa-miR-4645-3p 1 1 0
chr22:23891997|23892205 hsa-miR-6732-3p 1 0 0
chr22:23891997|23892205 hsa-miR-212-3p 1 0 0
chr22:23891997|23892205 hsa-miR-6737-5p 1 0 0
chr22:23891997|23892205 hsa-miR-6751-5p 0 1 0
chr22:23891997|23892205 hsa-miR-4700-5p 0 1 0
chr22:23891997|23892205 hsa-miR-6791-5p 0 1 0
chr22:23891997|23892205 hsa-miR-6775-3p 1 0 0
chr22:23891997|23892205 hsa-miR-6751-3p 1 0 0
chr22:23891997|23892205 hsa-miR-6823-3p 1 1 0
chr22:23891997|23892205 hsa-miR-4799-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr22:23891997|23892205
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MAEAHRDRVTPGPCDSTTPSIRGDCHWHLGHLVLITPLCQVNTIVIPKLQMGKVSQMSMLVRGKSY
Nucleotide Sequence TTGGCGGAGGCTCACAGGGACCGGGTTACCCCAGGGCCTTGTGACAGTACTACCCCTAGTATCAGAGGAGACTGTCATTGGCATTTAGGCCACTTGGTGCTCATAACACCTCTATGTCAGGTGAACACTATTGTCATCCCCAAATTACAGATGGGGAAAGTGAGCCAAATGTCCATGCTAGTAAGAGGCAAATCATAT

CircID chr22:23891997|23892205
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSLAFRPLGAHNTSMSGEHYCHPQITDGESEPNVHASKRQIIS
Nucleotide Sequence CTGTCATTGGCATTTAGGCCACTTGGTGCTCATAACACCTCTATGTCAGGTGAACACTATTGTCATCCCCAAATTACAGATGGGGAAAGTGAGCCAAATGTCCATGCTAGTAAGAGGCAAATCATATCA

CircID chr22:23891997|23892205
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPMTVSSDTRGSTVTRPWGNPVPVSLRQPSL
Nucleotide Sequence ATGCCAATGACAGTCTCCTCTGATACTAGGGGTAGTACTGTCACAAGGCCCTGGGGTAACCCGGTCCCTGTGAGCCTCCGCCAACCCTCCCTG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites