CircRNA Information

General Information
circRNA Basic Information
CircID chr22:26492055|26492276
Strand -
CircType exon
Host Gene ENSG00000100104.11;
Algorism CIRI2;
Sequence CCACGTCTTCTCGCCCTGGACAAAGACCACTCCCCGGTCGATGTAGATCACAATGCGGCCAAAGGTGTAGAGCTGCTTCCCTTCGTGTCGCTTCCCAATGACGGGCATGAAGACAATGTTGTGCTCCTCAGCCTTGGTCTCAATGAGGTCCTTAAAGTTCATGGGCACAGAGCTAGCGGCCACGCCAATGCCCCTCTGAGCCATGTTCTCAGCCTCCCGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:26492055|26492276 hsa-miR-198 0 0 1
chr22:26492055|26492276 hsa-miR-146a-5p 0 0 1
chr22:26492055|26492276 hsa-miR-146a-3p 0 0 1
chr22:26492055|26492276 hsa-miR-511-5p 0 0 1
chr22:26492055|26492276 hsa-miR-511-3p 0 0 1
chr22:26492055|26492276 hsa-miR-589-5p 0 0 1
chr22:26492055|26492276 hsa-miR-589-3p 0 0 1
chr22:26492055|26492276 hsa-miR-616-5p 0 0 1
chr22:26492055|26492276 hsa-miR-616-3p 0 0 1
chr22:26492055|26492276 hsa-miR-646 0 0 1
chr22:26492055|26492276 hsa-miR-1204 0 0 1
chr22:26492055|26492276 hsa-miR-1253 0 0 1
chr22:26492055|26492276 hsa-miR-1256 0 1 1
chr22:26492055|26492276 hsa-miR-769-5p 0 0 1
chr22:26492055|26492276 hsa-miR-485-5p 0 0 1
chr22:26492055|26492276 hsa-miR-423-5p 0 1 1
chr22:26492055|26492276 hsa-miR-146b-5p 0 0 1
chr22:26492055|26492276 hsa-miR-24 0 0 1
chr22:26492055|26492276 hsa-miR-608 1 0 0
chr22:26492055|26492276 hsa-miR-663a 1 0 0
chr22:26492055|26492276 hsa-miR-658 1 0 0
chr22:26492055|26492276 hsa-miR-1293 1 0 0
chr22:26492055|26492276 hsa-miR-1268a 1 0 0
chr22:26492055|26492276 hsa-miR-3139 1 0 0
chr22:26492055|26492276 hsa-miR-3929 0 1 0
chr22:26492055|26492276 hsa-miR-1268b 1 0 0
chr22:26492055|26492276 hsa-miR-4462 0 1 0
chr22:26492055|26492276 hsa-miR-4478 0 1 0
chr22:26492055|26492276 hsa-miR-4526 1 0 0
chr22:26492055|26492276 hsa-miR-4651 1 0 0
chr22:26492055|26492276 hsa-miR-4656 1 1 0
chr22:26492055|26492276 hsa-miR-4669 1 0 0
chr22:26492055|26492276 hsa-miR-4706 1 0 0
chr22:26492055|26492276 hsa-miR-5192 1 0 0
chr22:26492055|26492276 hsa-miR-6086 1 0 0
chr22:26492055|26492276 hsa-miR-8089 1 0 0
chr22:26492055|26492276 hsa-miR-4433b-3p 1 0 0
chr22:26492055|26492276 hsa-miR-504-3p 1 0 0
chr22:26492055|26492276 hsa-miR-7106-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6894-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6799-5p 1 0 0
chr22:26492055|26492276 hsa-miR-4786-5p 0 1 0
chr22:26492055|26492276 hsa-miR-3192-5p 1 0 0
chr22:26492055|26492276 hsa-miR-4655-5p 1 1 0
chr22:26492055|26492276 hsa-miR-6716-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6782-5p 1 0 0
chr22:26492055|26492276 hsa-miR-193b-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6753-5p 0 1 0
chr22:26492055|26492276 hsa-miR-6771-5p 1 0 0
chr22:26492055|26492276 hsa-miR-659-5p 1 0 0
chr22:26492055|26492276 hsa-miR-193a-5p 1 1 0
chr22:26492055|26492276 hsa-miR-6824-5p 1 0 0
chr22:26492055|26492276 hsa-miR-3162-5p 1 0 0
chr22:26492055|26492276 hsa-miR-7856-5p 0 1 0
chr22:26492055|26492276 hsa-miR-6889-3p 0 1 0
chr22:26492055|26492276 hsa-miR-6782-3p 0 1 0
chr22:26492055|26492276 hsa-miR-33a-5p 0 1 0
chr22:26492055|26492276 hsa-miR-10400-5p 1 0 0
chr22:26492055|26492276 hsa-miR-1207-5p 1 0 0
chr22:26492055|26492276 hsa-miR-1233-5p 1 1 0
chr22:26492055|26492276 hsa-miR-4763-3p 1 0 0
chr22:26492055|26492276 hsa-miR-6769b-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6778-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6787-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6775-5p 1 0 0
chr22:26492055|26492276 hsa-miR-1343-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6737-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6743-5p 1 1 0
chr22:26492055|26492276 hsa-miR-6752-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6803-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6813-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6819-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6842-5p 1 1 0
chr22:26492055|26492276 hsa-miR-6851-5p 1 0 0
chr22:26492055|26492276 hsa-miR-7110-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6763-5p 1 1 0
chr22:26492055|26492276 hsa-miR-6779-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6797-5p 0 1 0
chr22:26492055|26492276 hsa-miR-7111-5p 1 0 0
chr22:26492055|26492276 hsa-miR-4728-5p 1 0 0
chr22:26492055|26492276 hsa-miR-10396b-5p 1 0 0
chr22:26492055|26492276 hsa-miR-328-5p 1 1 0
chr22:26492055|26492276 hsa-miR-3689a-3p 1 0 0
chr22:26492055|26492276 hsa-miR-4685-5p 0 1 0
chr22:26492055|26492276 hsa-miR-4745-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6777-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6846-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6848-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6889-5p 1 0 0
chr22:26492055|26492276 hsa-miR-939-5p 1 0 0
chr22:26492055|26492276 hsa-miR-4646-5p 0 1 0
chr22:26492055|26492276 hsa-miR-6750-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6785-5p 1 0 0
chr22:26492055|26492276 hsa-miR-6837-5p 0 1 0
chr22:26492055|26492276 hsa-miR-4756-5p 0 1 0
chr22:26492055|26492276 hsa-miR-6884-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:26492055|26492276
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence MDKDHSPVDVDHNAAKGVELLPFVSLPNDGHEDNVVLLSLGLNEVLKVHGHRASGHANAPLSHVLSLPP
Nucleotide Sequence CTGGACAAAGACCACTCCCCGGTCGATGTAGATCACAATGCGGCCAAAGGTGTAGAGCTGCTTCCCTTCGTGTCGCTTCCCAATGACGGGCATGAAGACAATGTTGTGCTCCTCAGCCTTGGTCTCAATGAGGTCCTTAAAGTTCATGGGCACAGAGCTAGCGGCCACGCCAATGCCCCTCTGAGCCATGTTCTCAGCCTCCCGCCT
CircID chr22:26492055|26492276
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MTGMKTMLCSSALVSMRSLKFMGTELAATPMPL
Nucleotide Sequence ATGACGGGCATGAAGACAATGTTGTGCTCCTCAGCCTTGGTCTCAATGAGGTCCTTAAAGTTCATGGGCACAGAGCTAGCGGCCACGCCAATGCCCCTCTGA
CircID chr22:26492055|26492276
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MAQRGIGVAASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTW
Nucleotide Sequence ATGGCTCAGAGGGGCATTGGCGTGGCCGCTAGCTCTGTGCCCATGAACTTTAAGGACCTCATTGAGACCAAGGCTGAGGAGCACAACATTGTCTTCATGCCCGTCATTGGGAAGCGACACGAAGGGAAGCAGCTCTACACCTTTGGCCGCATTGTGATCTACATCGACCGGGGAGTGGTCTTTGTCCAGGGCGAGAAGACGTGG
CircID chr22:26492055|26492276
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MRPRLRSTTLSSCPSLGSDTKGSSSTPLAAL
Nucleotide Sequence TTGAGACCAAGGCTGAGGAGCACAACATTGTCTTCATGCCCGTCATTGGGAAGCGACACGAAGGGAAGCAGCTCTACACCTTTGGCCGCATTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab