CircRNA Information

General Information
circRNA Basic Information
CircID chr22:28795568|28795734
Strand +
CircType exon
Host Gene ENSG00000280111.1;
Algorism CIRI2;
Sequence AGTCTGATATCCTGTTGGGCATTCTGGACAACTTGGACCCAGTCATGTTCTTCAAATGCCCTTCCCCAGAGCCTGCCAGCCTGGAGGAGCTCCCAGAGGTCTACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCTTTCTCTGTCAGTGGGGACGTCATCAGCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:28795568|28795734 hsa-miR-198 0 1 1
chr22:28795568|28795734 hsa-miR-379-5p 0 0 1
chr22:28795568|28795734 hsa-miR-379-3p 0 0 1
chr22:28795568|28795734 hsa-miR-382-5p 0 0 1
chr22:28795568|28795734 hsa-miR-382-3p 0 0 1
chr22:28795568|28795734 hsa-miR-326 0 1 1
chr22:28795568|28795734 hsa-miR-484 0 0 1
chr22:28795568|28795734 hsa-miR-637 1 1 1
chr22:28795568|28795734 hsa-miR-647 0 0 1
chr22:28795568|28795734 hsa-miR-760 0 1 1
chr22:28795568|28795734 hsa-miR-920 0 0 1
chr22:28795568|28795734 hsa-miR-1237-5p 0 0 1
chr22:28795568|28795734 hsa-miR-1237-3p 0 0 1
chr22:28795568|28795734 hsa-miR-1248 0 0 1
chr22:28795568|28795734 hsa-miR-1321 0 0 1
chr22:28795568|28795734 hsa-miR-485-5p 0 1 1
chr22:28795568|28795734 hsa-miR-361-5p 0 0 1
chr22:28795568|28795734 hsa-miR-1207-5p 1 0 1
chr22:28795568|28795734 hsa-miR-330-5p 0 0 1
chr22:28795568|28795734 hsa-miR-365 0 0 1
chr22:28795568|28795734 hsa-miR-608 1 0 0
chr22:28795568|28795734 hsa-miR-612 1 0 0
chr22:28795568|28795734 hsa-miR-762 1 0 0
chr22:28795568|28795734 hsa-miR-892b 1 1 0
chr22:28795568|28795734 hsa-miR-2110 0 1 0
chr22:28795568|28795734 hsa-miR-3154 1 1 0
chr22:28795568|28795734 hsa-miR-3155a 0 1 0
chr22:28795568|28795734 hsa-miR-3660 0 1 0
chr22:28795568|28795734 hsa-miR-3907 1 0 0
chr22:28795568|28795734 hsa-miR-3916 1 1 0
chr22:28795568|28795734 hsa-miR-3929 1 0 0
chr22:28795568|28795734 hsa-miR-4462 1 0 0
chr22:28795568|28795734 hsa-miR-3155b 0 1 0
chr22:28795568|28795734 hsa-miR-4490 0 1 0
chr22:28795568|28795734 hsa-miR-4498 0 1 0
chr22:28795568|28795734 hsa-miR-4502 0 1 0
chr22:28795568|28795734 hsa-miR-4526 0 1 0
chr22:28795568|28795734 hsa-miR-1587 1 0 0
chr22:28795568|28795734 hsa-miR-4688 1 0 0
chr22:28795568|28795734 hsa-miR-4739 1 1 0
chr22:28795568|28795734 hsa-miR-5681a 0 1 0
chr22:28795568|28795734 hsa-miR-5698 1 0 0
chr22:28795568|28795734 hsa-miR-5787 1 0 0
chr22:28795568|28795734 hsa-miR-6085 1 0 0
chr22:28795568|28795734 hsa-miR-8089 1 1 0
chr22:28795568|28795734 hsa-miR-12120 1 1 0
chr22:28795568|28795734 hsa-miR-133a-5p 0 1 0
chr22:28795568|28795734 hsa-miR-6861-5p 1 1 0
chr22:28795568|28795734 hsa-miR-7106-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6894-5p 1 0 0
chr22:28795568|28795734 hsa-miR-4687-3p 1 0 0
chr22:28795568|28795734 hsa-miR-125a-3p 1 0 0
chr22:28795568|28795734 hsa-miR-6799-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6089 1 0 0
chr22:28795568|28795734 hsa-miR-3192-5p 0 1 0
chr22:28795568|28795734 hsa-miR-3928-3p 1 0 0
chr22:28795568|28795734 hsa-miR-6842-3p 1 0 0
chr22:28795568|28795734 hsa-miR-7845-5p 1 0 0
chr22:28795568|28795734 hsa-miR-1292-5p 1 0 0
chr22:28795568|28795734 hsa-miR-185-3p 1 0 0
chr22:28795568|28795734 hsa-miR-1226-5p 1 0 0
chr22:28795568|28795734 hsa-miR-1229-5p 0 1 0
chr22:28795568|28795734 hsa-miR-3202 0 1 0
chr22:28795568|28795734 hsa-miR-4446-3p 1 0 0
chr22:28795568|28795734 hsa-miR-149-3p 1 0 0
chr22:28795568|28795734 hsa-miR-6824-5p 1 0 0
chr22:28795568|28795734 hsa-miR-423-5p 1 0 0
chr22:28795568|28795734 hsa-miR-4763-3p 1 0 0
chr22:28795568|28795734 hsa-miR-6816-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6775-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6726-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6754-5p 1 1 0
chr22:28795568|28795734 hsa-miR-6756-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6803-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6813-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6779-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6808-5p 1 0 0
chr22:28795568|28795734 hsa-miR-7111-5p 1 0 0
chr22:28795568|28795734 hsa-miR-3620-5p 1 0 0
chr22:28795568|28795734 hsa-miR-5196-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6780b-5p 1 1 0
chr22:28795568|28795734 hsa-miR-328-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6846-5p 1 0 0
chr22:28795568|28795734 hsa-miR-6848-5p 1 0 0
chr22:28795568|28795734 hsa-miR-939-5p 1 0 0
chr22:28795568|28795734 hsa-miR-7151-3p 1 0 0
chr22:28795568|28795734 hsa-miR-4700-5p 0 1 0
chr22:28795568|28795734 hsa-miR-6750-5p 1 0 0
chr22:28795568|28795734 hsa-miR-4667-5p 0 1 0
chr22:28795568|28795734 hsa-miR-3529-5p 0 1 0
chr22:28795568|28795734 hsa-miR-9851-5p 0 1 0
chr22:28795568|28795734 hsa-miR-6884-5p 0 1 0
chr22:28795568|28795734 hsa-miR-4691-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:28795568|28795734
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVPYQPPFLCQWGRHQP
Nucleotide Sequence CTGATATCCTGTTGGGCATTCTGGACAACTTGGACCCAGTCATGTTCTTCAAATGCCCTTCCCCAGAGCCTGCCAGCCTGGAGGAGCTCCCAGAGGTCTACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCTTTCTCTGTCAGTGGGGACGTCATCAGCCA
CircID chr22:28795568|28795734
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MPFPRACQPGGAPRGLPRRTQFLTSLPFSVSGDVISQ
Nucleotide Sequence ATGCCCTTCCCCAGAGCCTGCCAGCCTGGAGGAGCTCCCAGAGGTCTACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCTTTCTCTGTCAGTGGGGACGTCATCAGCCAA
CircID chr22:28795568|28795734
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MLGILDNLDPVMFFKCPSPEPASLEELPEVYPEGPSSLPASLSLSVGTSSAK
Nucleotide Sequence CTGTTGGGCATTCTGGACAACTTGGACCCAGTCATGTTCTTCAAATGCCCTTCCCCAGAGCCTGCCAGCCTGGAGGAGCTCCCAGAGGTCTACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCTTTCTCTGTCAGTGGGGACGTCATCAGCCAAG
CircID chr22:28795568|28795734
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MAGSGEGHLKNMTGSKLSRMPNRISD
Nucleotide Sequence CTGGCAGGCTCTGGGGAAGGGCATTTGAAGAACATGACTGGGTCCAAGTTGTCCAGAATGCCCAACAGGATATCAGAC
CircID chr22:28795568|28795734
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MMTSPLTEKGRLVRNWVLLGRPLGAPPGWQALGKGI
Nucleotide Sequence CTGATGACGTCCCCACTGACAGAGAAAGGGAGGCTGGTAAGGAACTGGGTCCTTCTGGGTAGACCTCTGGGAGCTCCTCCAGGCTGGCAGGCTCTGGGGAAGGGCATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab