CircRNA Information

General Information
circRNA Basic Information
CircID chr22:29142409|29142643
Strand +
CircType exon
Host Gene ENSG00000279978.1;
Algorism CIRI2;
Sequence ACCTCGCTAATGTCCAGGAGTCCGCACTTGTATGGGACCAACTCCCAAGAGTACCTGAGAGTTCTCCCTGTCTGGCCCTGTTCCAAGACATAAAGATCAGGAGAAACTGATTTGTGTGTGGACAAAAATAGAGAAGCAAGAAAAATTCAATGTAACTAAAGCTACCCACCACCTGACAGCCATCTAGAATGTACCTGAGCCCTGTGCCAGCCATGACCACCTCTGTCATCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:29142409|29142643 hsa-miR-181c-5p 0 0 1
chr22:29142409|29142643 hsa-miR-181c-3p 0 0 1
chr22:29142409|29142643 hsa-miR-143-5p 0 0 1
chr22:29142409|29142643 hsa-miR-143-3p 0 0 1
chr22:29142409|29142643 hsa-miR-146a-5p 0 0 1
chr22:29142409|29142643 hsa-miR-146a-3p 0 0 1
chr22:29142409|29142643 hsa-miR-381-5p 0 0 1
chr22:29142409|29142643 hsa-miR-381-3p 0 0 1
chr22:29142409|29142643 hsa-miR-133b 0 0 1
chr22:29142409|29142643 hsa-miR-431-5p 0 0 1
chr22:29142409|29142643 hsa-miR-431-3p 0 0 1
chr22:29142409|29142643 hsa-miR-432-5p 0 0 1
chr22:29142409|29142643 hsa-miR-432-3p 0 0 1
chr22:29142409|29142643 hsa-miR-181d-5p 0 0 1
chr22:29142409|29142643 hsa-miR-181d-3p 0 0 1
chr22:29142409|29142643 hsa-miR-571 0 0 1
chr22:29142409|29142643 hsa-miR-578 0 0 1
chr22:29142409|29142643 hsa-miR-635 0 0 1
chr22:29142409|29142643 hsa-miR-300 0 0 1
chr22:29142409|29142643 hsa-miR-541-5p 0 0 1
chr22:29142409|29142643 hsa-miR-541-3p 0 0 1
chr22:29142409|29142643 hsa-miR-942-5p 0 0 1
chr22:29142409|29142643 hsa-miR-942-3p 0 0 1
chr22:29142409|29142643 hsa-miR-1266-5p 0 0 1
chr22:29142409|29142643 hsa-miR-1266-3p 0 0 1
chr22:29142409|29142643 hsa-miR-1324 0 0 1
chr22:29142409|29142643 hsa-miR-125a-3p 1 0 1
chr22:29142409|29142643 hsa-miR-654-5p 0 0 1
chr22:29142409|29142643 hsa-miR-654-3p 0 0 1
chr22:29142409|29142643 hsa-miR-518d-5p 0 0 1
chr22:29142409|29142643 hsa-miR-519b-5p 0 0 1
chr22:29142409|29142643 hsa-miR-519c-5p 0 0 1
chr22:29142409|29142643 hsa-miR-520c-5p 0 0 1
chr22:29142409|29142643 hsa-miR-146b-5p 0 0 1
chr22:29142409|29142643 hsa-miR-323-5p 0 0 1
chr22:29142409|29142643 hsa-miR-220c 0 0 1
chr22:29142409|29142643 hsa-miR-181a 0 0 1
chr22:29142409|29142643 hsa-miR-181b 0 0 1
chr22:29142409|29142643 hsa-miR-24 0 0 1
chr22:29142409|29142643 hsa-miR-526a 0 0 1
chr22:29142409|29142643 hsa-miR-133a 0 0 1
chr22:29142409|29142643 hsa-miR-608 1 0 0
chr22:29142409|29142643 hsa-miR-658 1 0 0
chr22:29142409|29142643 hsa-miR-760 1 0 0
chr22:29142409|29142643 hsa-miR-3195 1 0 0
chr22:29142409|29142643 hsa-miR-3911 1 0 0
chr22:29142409|29142643 hsa-miR-3918 1 0 0
chr22:29142409|29142643 hsa-miR-3945 1 0 0
chr22:29142409|29142643 hsa-miR-1268b 1 0 0
chr22:29142409|29142643 hsa-miR-4437 1 0 0
chr22:29142409|29142643 hsa-miR-4440 1 0 0
chr22:29142409|29142643 hsa-miR-4462 1 0 0
chr22:29142409|29142643 hsa-miR-4466 1 0 0
chr22:29142409|29142643 hsa-miR-4498 1 0 0
chr22:29142409|29142643 hsa-miR-4656 1 0 0
chr22:29142409|29142643 hsa-miR-4688 1 0 0
chr22:29142409|29142643 hsa-miR-4689 1 0 0
chr22:29142409|29142643 hsa-miR-4721 1 0 0
chr22:29142409|29142643 hsa-miR-4734 1 0 0
chr22:29142409|29142643 hsa-miR-4739 1 0 0
chr22:29142409|29142643 hsa-miR-4741 1 0 0
chr22:29142409|29142643 hsa-miR-4754 1 0 0
chr22:29142409|29142643 hsa-miR-5787 1 0 0
chr22:29142409|29142643 hsa-miR-6081 1 0 0
chr22:29142409|29142643 hsa-miR-6088 1 0 0
chr22:29142409|29142643 hsa-miR-6132 1 0 0
chr22:29142409|29142643 hsa-miR-7150 1 0 0
chr22:29142409|29142643 hsa-miR-8089 1 0 0
chr22:29142409|29142643 hsa-miR-12127 1 0 0
chr22:29142409|29142643 hsa-miR-150-3p 1 0 0
chr22:29142409|29142643 hsa-miR-92a-2-5p 1 0 0
chr22:29142409|29142643 hsa-miR-323a-5p 1 0 0
chr22:29142409|29142643 hsa-miR-7106-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4687-3p 1 0 0
chr22:29142409|29142643 hsa-miR-6854-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6799-5p 1 0 0
chr22:29142409|29142643 hsa-miR-3622a-5p 1 0 0
chr22:29142409|29142643 hsa-miR-3064-5p 1 0 0
chr22:29142409|29142643 hsa-miR-8069 1 0 0
chr22:29142409|29142643 hsa-miR-3682-3p 1 0 0
chr22:29142409|29142643 hsa-miR-7845-5p 1 0 0
chr22:29142409|29142643 hsa-miR-1292-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6798-5p 1 0 0
chr22:29142409|29142643 hsa-miR-2467-3p 1 0 0
chr22:29142409|29142643 hsa-miR-6782-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6874-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6810-5p 1 0 0
chr22:29142409|29142643 hsa-miR-5088-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6784-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4640-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6753-5p 1 0 0
chr22:29142409|29142643 hsa-miR-3127-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6823-5p 1 0 0
chr22:29142409|29142643 hsa-miR-877-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4743-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4446-3p 1 0 0
chr22:29142409|29142643 hsa-miR-3162-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6800-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6802-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4715-5p 1 0 0
chr22:29142409|29142643 hsa-miR-181b-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6895-5p 1 0 0
chr22:29142409|29142643 hsa-miR-664b-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4750-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6505-5p 1 0 0
chr22:29142409|29142643 hsa-miR-1207-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4763-3p 1 0 0
chr22:29142409|29142643 hsa-miR-6870-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6737-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6743-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6819-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6851-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6722-3p 1 0 0
chr22:29142409|29142643 hsa-miR-6808-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6879-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6836-5p 1 0 0
chr22:29142409|29142643 hsa-miR-1909-3p 1 0 0
chr22:29142409|29142643 hsa-miR-4685-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4726-5p 1 0 0
chr22:29142409|29142643 hsa-miR-4745-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6735-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6845-5p 1 0 0
chr22:29142409|29142643 hsa-miR-3198 1 0 0
chr22:29142409|29142643 hsa-miR-6731-5p 1 0 0
chr22:29142409|29142643 hsa-miR-1185-2-3p 1 0 0
chr22:29142409|29142643 hsa-miR-6718-5p 1 0 0
chr22:29142409|29142643 hsa-miR-6837-5p 1 0 0
chr22:29142409|29142643 hsa-miR-323b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:29142409|29142643
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MSRSPHLYGTNSQEYLRVLPVWPCSKT
Nucleotide Sequence ATGTCCAGGAGTCCGCACTTGTATGGGACCAACTCCCAAGAGTACCTGAGAGTTCTCCCTGTCTGGCCCTGTTCCAAGACATAA
CircID chr22:29142409|29142643
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MSGPVPRHKDQEKLICVWTKIEKQEKFNVTKATHHLTAI
Nucleotide Sequence CTGTCTGGCCCTGTTCCAAGACATAAAGATCAGGAGAAACTGATTTGTGTGTGGACAAAAATAGAGAAGCAAGAAAAATTCAATGTAACTAAAGCTACCCACCACCTGACAGCCATCTAG
CircID chr22:29142409|29142643
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MTEVVMAGTGLRYILDGCQVVGSFSYIEFFLLLYFCPHTNQFLLIFMSWNRARQGELSGTLGSWSHTSADSWTLAR
Nucleotide Sequence ATGACAGAGGTGGTCATGGCTGGCACAGGGCTCAGGTACATTCTAGATGGCTGTCAGGTGGTGGGTAGCTTTAGTTACATTGAATTTTTCTTGCTTCTCTATTTTTGTCCACACACAAATCAGTTTCTCCTGATCTTTATGTCTTGGAACAGGGCCAGACAGGGAGAACTCTCAGGTACTCTTGGGAGTTGGTCCCATACAAGTGCGGACTCCTGGACATTAGCGAGG
CircID chr22:29142409|29142643
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MAVRWWVALVTLNFSCFSIFVHTQISFS
Nucleotide Sequence ATGGCTGTCAGGTGGTGGGTAGCTTTAGTTACATTGAATTTTTCTTGCTTCTCTATTTTTGTCCACACACAAATCAGTTTCTCCTGA
CircID chr22:29142409|29142643
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MSTHKSVSPDLYVLEQGQTGRTLRYSWELVPYKCGLLDISE
Nucleotide Sequence TTGTCCACACACAAATCAGTTTCTCCTGATCTTTATGTCTTGGAACAGGGCCAGACAGGGAGAACTCTCAGGTACTCTTGGGAGTTGGTCCCATACAAGTGCGGACTCCTGGACATTAGCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab