CircRNA Information

General Information
circRNA Basic Information
CircID chr22:29328004|29328180
Strand -
CircType exon
Host Gene ENSG00000100280.15;
Algorism CIRI2;
Sequence CCGCTTACCCAGCCCCATCTCTCGGCCCAGTCTTTGTGGCAGGAGGCCTGGGCTCAGAGGCGACACTGAGGAATGTATCACAGGCAGTGACCACCCTTGGGGCAGAAGTGGGGAGTTGGGGATAGTGCAGCTGCCAGTCGGTGGGGAGCCCGAGACAGGGGCTCTGGGAGCTTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:29328004|29328180 hsa-miR-181c-5p 0 0 1
chr22:29328004|29328180 hsa-miR-181c-3p 0 0 1
chr22:29328004|29328180 hsa-miR-181d-5p 0 0 1
chr22:29328004|29328180 hsa-miR-181d-3p 0 0 1
chr22:29328004|29328180 hsa-miR-555 0 0 1
chr22:29328004|29328180 hsa-miR-298 0 1 1
chr22:29328004|29328180 hsa-miR-1293 0 0 1
chr22:29328004|29328180 hsa-miR-1281 0 0 1
chr22:29328004|29328180 hsa-miR-1225-3p 1 1 1
chr22:29328004|29328180 hsa-miR-885-3p 0 0 1
chr22:29328004|29328180 hsa-miR-339-5p 0 0 1
chr22:29328004|29328180 hsa-miR-324-3p 0 0 1
chr22:29328004|29328180 hsa-miR-1280 0 0 1
chr22:29328004|29328180 hsa-miR-1233 0 0 1
chr22:29328004|29328180 hsa-miR-323-5p 0 0 1
chr22:29328004|29328180 hsa-miR-181a 0 0 1
chr22:29328004|29328180 hsa-miR-181b 0 0 1
chr22:29328004|29328180 hsa-miR-346 1 0 0
chr22:29328004|29328180 hsa-miR-1913 1 0 0
chr22:29328004|29328180 hsa-miR-4303 0 1 0
chr22:29328004|29328180 hsa-miR-4286 0 1 0
chr22:29328004|29328180 hsa-miR-3921 0 1 0
chr22:29328004|29328180 hsa-miR-4463 0 1 0
chr22:29328004|29328180 hsa-miR-4492 0 1 0
chr22:29328004|29328180 hsa-miR-4505 0 1 0
chr22:29328004|29328180 hsa-miR-1587 1 0 0
chr22:29328004|29328180 hsa-miR-4656 1 0 0
chr22:29328004|29328180 hsa-miR-5787 0 1 0
chr22:29328004|29328180 hsa-miR-6133 1 0 0
chr22:29328004|29328180 hsa-miR-6860 1 0 0
chr22:29328004|29328180 hsa-miR-7703 1 0 0
chr22:29328004|29328180 hsa-miR-7974 1 0 0
chr22:29328004|29328180 hsa-miR-6861-5p 0 1 0
chr22:29328004|29328180 hsa-miR-486-5p 1 0 0
chr22:29328004|29328180 hsa-miR-6089 1 0 0
chr22:29328004|29328180 hsa-miR-1915-5p 1 0 0
chr22:29328004|29328180 hsa-miR-6735-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6716-3p 1 0 0
chr22:29328004|29328180 hsa-miR-4436b-5p 1 1 0
chr22:29328004|29328180 hsa-miR-939-3p 1 0 0
chr22:29328004|29328180 hsa-miR-3944-3p 0 1 0
chr22:29328004|29328180 hsa-miR-6749-5p 1 0 0
chr22:29328004|29328180 hsa-miR-4667-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6781-5p 1 0 0
chr22:29328004|29328180 hsa-miR-6769a-3p 0 1 0
chr22:29328004|29328180 hsa-miR-6877-5p 1 1 0
chr22:29328004|29328180 hsa-miR-664b-5p 1 0 0
chr22:29328004|29328180 hsa-miR-6811-3p 0 1 0
chr22:29328004|29328180 hsa-miR-7106-3p 0 1 0
chr22:29328004|29328180 hsa-miR-660-3p 0 1 0
chr22:29328004|29328180 hsa-miR-6793-3p 1 1 0
chr22:29328004|29328180 hsa-miR-1224-3p 1 0 0
chr22:29328004|29328180 hsa-miR-106b-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6814-5p 1 1 0
chr22:29328004|29328180 hsa-miR-6872-3p 1 1 0
chr22:29328004|29328180 hsa-miR-6760-3p 1 1 0
chr22:29328004|29328180 hsa-miR-3162-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6731-3p 1 1 0
chr22:29328004|29328180 hsa-miR-4679 0 1 0
chr22:29328004|29328180 hsa-miR-4650-5p 0 1 0
chr22:29328004|29328180 hsa-miR-1207-5p 1 0 0
chr22:29328004|29328180 hsa-miR-6812-5p 1 0 0
chr22:29328004|29328180 hsa-miR-5001-5p 0 1 0
chr22:29328004|29328180 hsa-miR-3620-5p 1 1 0
chr22:29328004|29328180 hsa-miR-4685-5p 1 0 0
chr22:29328004|29328180 hsa-miR-1199-5p 1 1 0
chr22:29328004|29328180 hsa-miR-6877-3p 1 1 0
chr22:29328004|29328180 hsa-miR-6724-5p 1 0 0
chr22:29328004|29328180 hsa-miR-193b-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6810-3p 1 0 0
chr22:29328004|29328180 hsa-miR-10400-3p 1 0 0
chr22:29328004|29328180 hsa-miR-3928-5p 0 1 0
chr22:29328004|29328180 hsa-miR-6819-3p 0 1 0
chr22:29328004|29328180 hsa-miR-330-5p 0 1 0
chr22:29328004|29328180 hsa-miR-6807-3p 1 0 0
chr22:29328004|29328180 hsa-miR-6806-3p 0 1 0
chr22:29328004|29328180 hsa-miR-92b-3p 1 0 0
chr22:29328004|29328180 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:29328004|29328180
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MGQKWGVGDSAAASRWGARDRGSGSFC
Nucleotide Sequence TTGGGGCAGAAGTGGGGAGTTGGGGATAGTGCAGCTGCCAGTCGGTGGGGAGCCCGAGACAGGGGCTCTGGGAGCTTCTGC
CircID chr22:29328004|29328180
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGSEATLRNVSQAVTTLGAEVGSWG
Nucleotide Sequence CTGGGCTCAGAGGCGACACTGAGGAATGTATCACAGGCAGTGACCACCCTTGGGGCAGAAGTGGGGAGTTGGGGATAG
CircID chr22:29328004|29328180
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MPQGWSLPVIHSSVSPLSPGLLPQRLGREMGLGKR
Nucleotide Sequence CTGCCCCAAGGGTGGTCACTGCCTGTGATACATTCCTCAGTGTCGCCTCTGAGCCCAGGCCTCCTGCCACAAAGACTGGGCCGAGAGATGGGGCTGGGTAAGCGG
CircID chr22:29328004|29328180
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MSRAPHRLAAALSPTPHFCPKGGHCL
Nucleotide Sequence CTGTCTCGGGCTCCCCACCGACTGGCAGCTGCACTATCCCCAACTCCCCACTTCTGCCCCAAGGGTGGTCACTGCCTGTGA
CircID chr22:29328004|29328180
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MHYPQLPTSAPRVVTACDTFLSVASEPRPPATKTGPRDGAG
Nucleotide Sequence CTGCACTATCCCCAACTCCCCACTTCTGCCCCAAGGGTGGTCACTGCCTGTGATACATTCCTCAGTGTCGCCTCTGAGCCCAGGCCTCCTGCCACAAAGACTGGGCCGAGAGATGGGGCTGGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab