CircRNA Information

General Information
circRNA Basic Information
CircID chr22:29554941|29555188
Strand -
CircType exon
Host Gene ENSG00000100296.12;
Algorism CIRI2;
Sequence CCCTCCCGCCACCTCCACACACCAGGTGGCCCTGCAGAATGAGGGTTGGGCTGATAGAATGTCAATTAGGGGAGACAGGATACAGGGTGAGGGAACAGGGTCTAGCTTGTATATTTGCCTGCAGGAAGGAGGGAGGGCAGGAGAGACTCTGCATAGAAGGACTGGAACTACACATTTAAGTTTTCAACCCCAATATGCAGGGGGAAACAGCCAAGCCACTCTCCATCTGTCTAGTATTAGGAACCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:29554941|29555188 hsa-miR-10a-5p 0 0 1
chr22:29554941|29555188 hsa-miR-10a-3p 0 0 1
chr22:29554941|29555188 hsa-miR-10b-5p 0 0 1
chr22:29554941|29555188 hsa-miR-10b-3p 0 0 1
chr22:29554941|29555188 hsa-miR-200b-5p 0 0 1
chr22:29554941|29555188 hsa-miR-200b-3p 0 0 1
chr22:29554941|29555188 hsa-miR-185-5p 0 0 1
chr22:29554941|29555188 hsa-miR-185-3p 0 0 1
chr22:29554941|29555188 hsa-miR-200c-5p 0 0 1
chr22:29554941|29555188 hsa-miR-200c-3p 0 0 1
chr22:29554941|29555188 hsa-miR-381-5p 0 0 1
chr22:29554941|29555188 hsa-miR-381-3p 0 0 1
chr22:29554941|29555188 hsa-miR-448 0 0 1
chr22:29554941|29555188 hsa-miR-429 0 0 1
chr22:29554941|29555188 hsa-miR-489-5p 0 0 1
chr22:29554941|29555188 hsa-miR-489-3p 0 0 1
chr22:29554941|29555188 hsa-miR-504-5p 0 0 1
chr22:29554941|29555188 hsa-miR-504-3p 0 0 1
chr22:29554941|29555188 hsa-miR-570-5p 0 0 1
chr22:29554941|29555188 hsa-miR-570-3p 0 0 1
chr22:29554941|29555188 hsa-miR-647 0 0 1
chr22:29554941|29555188 hsa-miR-300 0 0 1
chr22:29554941|29555188 hsa-miR-1237-5p 0 0 1
chr22:29554941|29555188 hsa-miR-1237-3p 0 0 1
chr22:29554941|29555188 hsa-miR-1205 0 0 1
chr22:29554941|29555188 hsa-miR-1248 0 0 1
chr22:29554941|29555188 hsa-miR-1279 0 0 1
chr22:29554941|29555188 hsa-miR-145-5p 0 0 1
chr22:29554941|29555188 hsa-miR-28-3p 0 0 1
chr22:29554941|29555188 hsa-miR-1184 0 0 1
chr22:29554941|29555188 hsa-miR-642 0 0 1
chr22:29554941|29555188 hsa-miR-1274b 0 0 1
chr22:29554941|29555188 hsa-miR-644 0 0 1
chr22:29554941|29555188 hsa-miR-544 0 0 1
chr22:29554941|29555188 hsa-miR-147 0 0 1
chr22:29554941|29555188 hsa-miR-663 0 0 1
chr22:29554941|29555188 hsa-miR-346 1 0 0
chr22:29554941|29555188 hsa-miR-1183 1 0 0
chr22:29554941|29555188 hsa-miR-1976 1 0 0
chr22:29554941|29555188 hsa-miR-4289 1 0 0
chr22:29554941|29555188 hsa-miR-4290 1 0 0
chr22:29554941|29555188 hsa-miR-3972 1 0 0
chr22:29554941|29555188 hsa-miR-6075 1 0 0
chr22:29554941|29555188 hsa-miR-6749-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6836-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6892-3p 1 0 0
chr22:29554941|29555188 hsa-miR-7110-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6841-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6726-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6845-3p 1 0 0
chr22:29554941|29555188 hsa-miR-877-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6884-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4763-5p 1 0 0
chr22:29554941|29555188 hsa-miR-6894-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6803-3p 1 0 0
chr22:29554941|29555188 hsa-miR-3074-3p 1 0 0
chr22:29554941|29555188 hsa-miR-3191-5p 1 0 0
chr22:29554941|29555188 hsa-miR-642b-5p 1 0 0
chr22:29554941|29555188 hsa-miR-4743-3p 1 0 0
chr22:29554941|29555188 hsa-miR-7111-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6830-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4667-3p 1 0 0
chr22:29554941|29555188 hsa-miR-1236-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4732-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6895-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6886-3p 1 0 0
chr22:29554941|29555188 hsa-miR-5088-3p 1 0 0
chr22:29554941|29555188 hsa-miR-328-3p 1 0 0
chr22:29554941|29555188 hsa-miR-3620-3p 1 0 0
chr22:29554941|29555188 hsa-miR-1229-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6779-3p 1 0 0
chr22:29554941|29555188 hsa-miR-642a-5p 1 0 0
chr22:29554941|29555188 hsa-miR-6732-3p 1 0 0
chr22:29554941|29555188 hsa-miR-3162-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6731-3p 1 0 0
chr22:29554941|29555188 hsa-miR-3127-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4685-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4632-5p 1 0 0
chr22:29554941|29555188 hsa-miR-6799-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4722-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6727-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6784-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6862-3p 1 0 0
chr22:29554941|29555188 hsa-miR-10401-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6775-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6823-3p 1 0 0
chr22:29554941|29555188 hsa-miR-6744-3p 1 0 0
chr22:29554941|29555188 hsa-miR-4690-3p 1 0 0
chr22:29554941|29555188 hsa-miR-5699-3p 1 0 0
chr22:29554941|29555188 hsa-miR-412-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:29554941|29555188
ORF Type ORF1
Protein Length 72
Nucleotide Length 216
Protein Sequence MQNEGWADRMSIRGDRIQGEGTGSSLYICLQEGGRAGETLHRRTGTTHLSFQPQYAGGNSQATLHLSSIRNL
Nucleotide Sequence CTGCAGAATGAGGGTTGGGCTGATAGAATGTCAATTAGGGGAGACAGGATACAGGGTGAGGGAACAGGGTCTAGCTTGTATATTTGCCTGCAGGAAGGAGGGAGGGCAGGAGAGACTCTGCATAGAAGGACTGGAACTACACATTTAAGTTTTCAACCCCAATATGCAGGGGGAAACAGCCAAGCCACTCTCCATCTGTCTAGTATTAGGAACCTC
CircID chr22:29554941|29555188
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MRVGLIECQLGETGYRVREQGLACIFACRKEGGQERLCIEGLELHI
Nucleotide Sequence ATGAGGGTTGGGCTGATAGAATGTCAATTAGGGGAGACAGGATACAGGGTGAGGGAACAGGGTCTAGCTTGTATATTTGCCTGCAGGAAGGAGGGAGGGCAGGAGAGACTCTGCATAGAAGGACTGGAACTACACATTTAA
CircID chr22:29554941|29555188
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MCSSSPSMQSLSCPPSFLQANIQARPCSLTLYPVSPN
Nucleotide Sequence ATGTGTAGTTCCAGTCCTTCTATGCAGAGTCTCTCCTGCCCTCCCTCCTTCCTGCAGGCAAATATACAAGCTAGACCCTGTTCCCTCACCCTGTATCCTGTCTCCCCTAATTGA
CircID chr22:29554941|29555188
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSPLIDILSAQPSFCRATWCVEVAGG
Nucleotide Sequence CTGTCTCCCCTAATTGACATTCTATCAGCCCAACCCTCATTCTGCAGGGCCACCTGGTGTGTGGAGGTGGCGGGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab