CircRNA Information

General Information
circRNA Basic Information
CircID chr22:30243745|30243900
Strand +
CircType exon
Host Gene ENSG00000128342.4;
Algorism CIRI2;
Sequence CCGGGACCAGAAGATCCTCAACCCCAGTGCCCTCAGCCTCCACAGCAAGCTCAACGCCACCGCCGACATCCTGCGAGGCCTCCTTAGCAACGTGCTGTGCCGCCTGTGCAGCAAGTACCACGTGGGCCATGTGGACGTGACCTACGGCCCTGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:30243745|30243900 hsa-miR-650 0 0 1
chr22:30243745|30243900 hsa-miR-662 0 0 1
chr22:30243745|30243900 hsa-miR-1265 0 1 1
chr22:30243745|30243900 hsa-miR-1224-5p 0 0 1
chr22:30243745|30243900 hsa-miR-485-5p 0 0 1
chr22:30243745|30243900 hsa-miR-1185 0 0 1
chr22:30243745|30243900 hsa-miR-637 1 0 0
chr22:30243745|30243900 hsa-miR-762 1 0 0
chr22:30243745|30243900 hsa-miR-760 1 0 0
chr22:30243745|30243900 hsa-miR-1469 1 0 0
chr22:30243745|30243900 hsa-miR-2861 1 0 0
chr22:30243745|30243900 hsa-miR-3147 1 0 0
chr22:30243745|30243900 hsa-miR-3188 1 0 0
chr22:30243745|30243900 hsa-miR-3196 1 0 0
chr22:30243745|30243900 hsa-miR-4322 1 0 0
chr22:30243745|30243900 hsa-miR-4327 1 0 0
chr22:30243745|30243900 hsa-miR-3652 1 0 0
chr22:30243745|30243900 hsa-miR-3918 0 1 0
chr22:30243745|30243900 hsa-miR-3937 0 1 0
chr22:30243745|30243900 hsa-miR-3945 1 0 0
chr22:30243745|30243900 hsa-miR-4437 1 0 0
chr22:30243745|30243900 hsa-miR-4467 1 0 0
chr22:30243745|30243900 hsa-miR-4487 1 0 0
chr22:30243745|30243900 hsa-miR-4521 0 1 0
chr22:30243745|30243900 hsa-miR-3960 1 0 0
chr22:30243745|30243900 hsa-miR-4656 1 1 0
chr22:30243745|30243900 hsa-miR-4710 1 0 0
chr22:30243745|30243900 hsa-miR-4721 1 0 0
chr22:30243745|30243900 hsa-miR-4739 1 0 0
chr22:30243745|30243900 hsa-miR-4767 1 0 0
chr22:30243745|30243900 hsa-miR-5572 1 0 0
chr22:30243745|30243900 hsa-miR-5787 1 0 0
chr22:30243745|30243900 hsa-miR-6085 1 0 0
chr22:30243745|30243900 hsa-miR-7704 1 0 0
chr22:30243745|30243900 hsa-miR-8075 1 0 0
chr22:30243745|30243900 hsa-miR-8089 1 0 0
chr22:30243745|30243900 hsa-miR-12119 1 0 0
chr22:30243745|30243900 hsa-miR-128-1-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6894-5p 1 0 0
chr22:30243745|30243900 hsa-miR-4687-3p 1 0 0
chr22:30243745|30243900 hsa-miR-219a-1-3p 1 0 0
chr22:30243745|30243900 hsa-miR-6804-5p 1 0 0
chr22:30243745|30243900 hsa-miR-7114-5p 1 1 0
chr22:30243745|30243900 hsa-miR-6089 1 0 0
chr22:30243745|30243900 hsa-miR-6880-5p 1 1 0
chr22:30243745|30243900 hsa-miR-7847-3p 1 1 0
chr22:30243745|30243900 hsa-miR-4695-5p 0 1 0
chr22:30243745|30243900 hsa-miR-4722-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6776-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6772-5p 1 0 0
chr22:30243745|30243900 hsa-miR-185-3p 1 0 0
chr22:30243745|30243900 hsa-miR-6786-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6852-5p 1 0 0
chr22:30243745|30243900 hsa-miR-1226-5p 1 1 0
chr22:30243745|30243900 hsa-miR-4717-3p 0 1 0
chr22:30243745|30243900 hsa-miR-6834-5p 1 0 0
chr22:30243745|30243900 hsa-miR-4787-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6789-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6781-5p 1 0 0
chr22:30243745|30243900 hsa-miR-7152-3p 0 1 0
chr22:30243745|30243900 hsa-miR-4639-5p 0 1 0
chr22:30243745|30243900 hsa-miR-10400-5p 1 0 0
chr22:30243745|30243900 hsa-miR-4763-3p 1 0 0
chr22:30243745|30243900 hsa-miR-6787-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6726-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6737-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6752-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6756-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6803-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6813-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6819-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6851-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6751-5p 1 0 0
chr22:30243745|30243900 hsa-miR-3620-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6836-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6862-5p 1 0 0
chr22:30243745|30243900 hsa-miR-328-5p 1 0 0
chr22:30243745|30243900 hsa-miR-4632-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6735-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6846-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6848-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6858-5p 1 1 0
chr22:30243745|30243900 hsa-miR-6887-5p 1 0 0
chr22:30243745|30243900 hsa-miR-1266-5p 1 1 0
chr22:30243745|30243900 hsa-miR-6855-5p 0 1 0
chr22:30243745|30243900 hsa-miR-4700-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6785-5p 1 0 0
chr22:30243745|30243900 hsa-miR-6884-5p 0 1 0
chr22:30243745|30243900 hsa-miR-370-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:30243745|30243900
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MRGLLSNVLCRLCSKYHVGHVDVTYGPD
Nucleotide Sequence CTGCGAGGCCTCCTTAGCAACGTGCTGTGCCGCCTGTGCAGCAAGTACCACGTGGGCCATGTGGACGTGACCTACGGCCCTGAC
CircID chr22:30243745|30243900
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MLHRRHSTLLRRPRRMSAVALSLLWRLRALGLRIFWSR
Nucleotide Sequence TTGCTGCACAGGCGGCACAGCACGTTGCTAAGGAGGCCTCGCAGGATGTCGGCGGTGGCGTTGAGCTTGCTGTGGAGGCTGAGGGCACTGGGGTTGAGGATCTTCTGGTCCCGG
CircID chr22:30243745|30243900
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MAHVVLAAQAAQHVAKEASQDVGGGVELAVEAEGTGVEDLLVP
Nucleotide Sequence ATGGCCCACGTGGTACTTGCTGCACAGGCGGCACAGCACGTTGCTAAGGAGGCCTCGCAGGATGTCGGCGGTGGCGTTGAGCTTGCTGTGGAGGCTGAGGGCACTGGGGTTGAGGATCTTCTGGTCCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab