CircRNA Information

General Information
circRNA Basic Information
CircID chr22:30415770|30415995
Strand +
CircType exon
Host Gene ENSG00000100003.16;
Algorism CIRI2;
Sequence CTGGTCTCGCACATAATACTTCCTGGGGATGTCACCCCCGTAGTTGATCTAGAAGCATGGCATGGAGTGAACTGGAATGTGCATTTGAGCCAGGCATCCCTGTTCACCTCTAGCCTCTGGCGGCTCATACCTTGGATTTGCACTTGGGGTTTCCATCAGGGTCAGTCATGGTGCCCCCATACTCCACAGGCACCTGGTCAGGGCTGATATGTTTCAGTAAAACCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:30415770|30415995 hsa-miR-19a-5p 0 0 1
chr22:30415770|30415995 hsa-miR-19a-3p 0 0 1
chr22:30415770|30415995 hsa-miR-130a-5p 0 0 1
chr22:30415770|30415995 hsa-miR-130a-3p 0 0 1
chr22:30415770|30415995 hsa-miR-149-5p 0 0 1
chr22:30415770|30415995 hsa-miR-149-3p 0 0 1
chr22:30415770|30415995 hsa-miR-301a-5p 0 0 1
chr22:30415770|30415995 hsa-miR-301a-3p 0 0 1
chr22:30415770|30415995 hsa-miR-130b-5p 0 0 1
chr22:30415770|30415995 hsa-miR-130b-3p 0 0 1
chr22:30415770|30415995 hsa-miR-489-5p 0 0 1
chr22:30415770|30415995 hsa-miR-489-3p 0 0 1
chr22:30415770|30415995 hsa-miR-494-5p 0 0 1
chr22:30415770|30415995 hsa-miR-494-3p 0 0 1
chr22:30415770|30415995 hsa-miR-504-5p 0 0 1
chr22:30415770|30415995 hsa-miR-504-3p 0 0 1
chr22:30415770|30415995 hsa-miR-661 0 0 1
chr22:30415770|30415995 hsa-miR-454-5p 0 0 1
chr22:30415770|30415995 hsa-miR-454-3p 0 0 1
chr22:30415770|30415995 hsa-miR-301b-5p 0 0 1
chr22:30415770|30415995 hsa-miR-301b-3p 0 0 1
chr22:30415770|30415995 hsa-miR-145-5p 0 0 1
chr22:30415770|30415995 hsa-miR-767-5p 0 1 1
chr22:30415770|30415995 hsa-miR-455-5p 0 0 1
chr22:30415770|30415995 hsa-miR-556-5p 0 0 1
chr22:30415770|30415995 hsa-miR-518d-5p 0 0 1
chr22:30415770|30415995 hsa-miR-519b-5p 0 0 1
chr22:30415770|30415995 hsa-miR-519c-5p 0 0 1
chr22:30415770|30415995 hsa-miR-520c-5p 0 0 1
chr22:30415770|30415995 hsa-miR-483-3p 0 0 1
chr22:30415770|30415995 hsa-miR-519b-3p 0 0 1
chr22:30415770|30415995 hsa-miR-519c-3p 0 0 1
chr22:30415770|30415995 hsa-miR-105 0 0 1
chr22:30415770|30415995 hsa-miR-550 0 0 1
chr22:30415770|30415995 hsa-miR-19b 0 0 1
chr22:30415770|30415995 hsa-miR-1254 0 0 1
chr22:30415770|30415995 hsa-miR-24 0 0 1
chr22:30415770|30415995 hsa-miR-526a 0 0 1
chr22:30415770|30415995 hsa-miR-519a 0 0 1
chr22:30415770|30415995 hsa-miR-543 0 1 0
chr22:30415770|30415995 hsa-miR-3665 1 0 0
chr22:30415770|30415995 hsa-miR-4439 0 1 0
chr22:30415770|30415995 hsa-miR-4513 1 1 0
chr22:30415770|30415995 hsa-miR-3978 1 0 0
chr22:30415770|30415995 hsa-miR-7706 1 0 0
chr22:30415770|30415995 hsa-miR-105-5p 0 1 0
chr22:30415770|30415995 hsa-miR-6840-3p 0 1 0
chr22:30415770|30415995 hsa-miR-671-5p 1 0 0
chr22:30415770|30415995 hsa-miR-7114-5p 1 1 0
chr22:30415770|30415995 hsa-miR-6089 1 0 0
chr22:30415770|30415995 hsa-miR-6757-5p 0 1 0
chr22:30415770|30415995 hsa-miR-593-5p 0 1 0
chr22:30415770|30415995 hsa-miR-6742-5p 1 0 0
chr22:30415770|30415995 hsa-miR-4633-5p 1 0 0
chr22:30415770|30415995 hsa-miR-6835-5p 1 0 0
chr22:30415770|30415995 hsa-miR-7109-5p 1 0 0
chr22:30415770|30415995 hsa-miR-1226-5p 1 0 0
chr22:30415770|30415995 hsa-miR-3074-3p 0 1 0
chr22:30415770|30415995 hsa-miR-7854-3p 0 1 0
chr22:30415770|30415995 hsa-miR-4787-5p 0 1 0
chr22:30415770|30415995 hsa-miR-378a-5p 0 1 0
chr22:30415770|30415995 hsa-miR-2276-3p 1 0 0
chr22:30415770|30415995 hsa-miR-4732-3p 0 1 0
chr22:30415770|30415995 hsa-miR-361-3p 1 0 0
chr22:30415770|30415995 hsa-miR-6508-3p 1 0 0
chr22:30415770|30415995 hsa-miR-5581-3p 0 1 0
chr22:30415770|30415995 hsa-miR-4763-3p 1 0 0
chr22:30415770|30415995 hsa-miR-6752-5p 1 1 0
chr22:30415770|30415995 hsa-miR-6842-5p 0 1 0
chr22:30415770|30415995 hsa-miR-6848-5p 1 0 0
chr22:30415770|30415995 hsa-miR-4697-5p 1 1 0
chr22:30415770|30415995 hsa-miR-4723-5p 1 0 0
chr22:30415770|30415995 hsa-miR-10394-3p 1 0 0
chr22:30415770|30415995 hsa-miR-3085-5p 1 0 0
chr22:30415770|30415995 hsa-miR-6855-5p 1 0 0
chr22:30415770|30415995 hsa-miR-550a-3-5p 0 1 0
chr22:30415770|30415995 hsa-miR-550a-5p 0 1 0
chr22:30415770|30415995 hsa-miR-9851-3p 0 1 0
chr22:30415770|30415995 hsa-miR-10397-5p 0 1 0
chr22:30415770|30415995 hsa-miR-6855-3p 0 1 0
chr22:30415770|30415995 hsa-miR-7853-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:30415770|30415995
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence LVSHIILPGDVTPVVDLEAWHGVNWNVHLSQASLFTSSLWRLIPWICTWGFHQGQSWCPHTPQAPGQG
Nucleotide Sequence CTGGTCTCGCACATAATACTTCCTGGGGATGTCACCCCCGTAGTTGATCTAGAAGCATGGCATGGAGTGAACTGGAATGTGCATTTGAGCCAGGCATCCCTGTTCACCTCTAGCCTCTGGCGGCTCATACCTTGGATTTGCACTTGGGGTTTCCATCAGGGTCAGTCATGGTGCCCCCATACTCCACAGGCACCTGGTCAGGGCTGA
CircID chr22:30415770|30415995
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MAAHTLDLHLGFPSGSVMVPPYSTGTWSGLICFSKT
Nucleotide Sequence CTGGCGGCTCATACCTTGGATTTGCACTTGGGGTTTCCATCAGGGTCAGTCATGGTGCCCCCATACTCCACAGGCACCTGGTCAGGGCTGATATGTTTCAGTAAAACC
CircID chr22:30415770|30415995
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MKHISPDQVPVEYGGTMTDPDGNPKCKSKV
Nucleotide Sequence CTGAAACATATCAGCCCTGACCAGGTGCCTGTGGAGTATGGGGGCACCATGACTGACCCTGATGGAAACCCCAAGTGCAAATCCAAGGTATGA
CircID chr22:30415770|30415995
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MTLMETPSANPRYEPPEARGEQGCLAQMHIPVHSMPCF
Nucleotide Sequence CTGACCCTGATGGAAACCCCAAGTGCAAATCCAAGGTATGAGCCGCCAGAGGCTAGAGGTGAACAGGGATGCCTGGCTCAAATGCACATTCCAGTTCACTCCATGCCATGCTTCTAG
CircID chr22:30415770|30415995
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence MSRQRLEVNRDAWLKCTFQFTPCHASRSTTGVTSPGSIMCET
Nucleotide Sequence ATGAGCCGCCAGAGGCTAGAGGTGAACAGGGATGCCTGGCTCAAATGCACATTCCAGTTCACTCCATGCCATGCTTCTAGATCAACTACGGGGGTGACATCCCCAGGAAGTATTATGTGCGAGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab