CircRNA Information

General Information
circRNA Basic Information
CircID chr22:30579782|30580120
Strand +
CircType exon
Host Gene ENSG00000100029.16;
Algorism CIRI2;
Sequence GTCACAGACTCCCGCATCACCCATCAGATTGTCGACCGGCCTGGGCAGCAGACCTCAGTCATTGGCAGGTAGGCCCTCAAGGGTCCTCGTCCGGATTTCTGGGTATCCTGTCTCAAAGGCCCTGCGATGCAGCAGGACCCTGAGTTGCCCTCTGTGACTCGTTTTTGCCTGCCACTCTGCGCCAGGTGCTACGTGCAGCCCCAGTGGGTGTTTGACTCAGTGAACGCCAGGCTCCTTCTCCCCGTGGCAGAGTACTTCTCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTTGTGACCGAGAAGGAAGGAGATTACGTTCCACCTGAGAAGCTGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:30579782|30580120 hsa-miR-29a-5p 0 0 1
chr22:30579782|30580120 hsa-miR-29a-3p 0 0 1
chr22:30579782|30580120 hsa-miR-216a-5p 0 0 1
chr22:30579782|30580120 hsa-miR-216a-3p 0 0 1
chr22:30579782|30580120 hsa-miR-29c-5p 0 0 1
chr22:30579782|30580120 hsa-miR-29c-3p 0 0 1
chr22:30579782|30580120 hsa-miR-370-5p 0 0 1
chr22:30579782|30580120 hsa-miR-370-3p 0 0 1
chr22:30579782|30580120 hsa-miR-488-5p 0 0 1
chr22:30579782|30580120 hsa-miR-488-3p 0 0 1
chr22:30579782|30580120 hsa-miR-510-5p 0 0 1
chr22:30579782|30580120 hsa-miR-510-3p 0 0 1
chr22:30579782|30580120 hsa-miR-611 1 1 1
chr22:30579782|30580120 hsa-miR-216b-5p 0 0 1
chr22:30579782|30580120 hsa-miR-216b-3p 0 0 1
chr22:30579782|30580120 hsa-miR-1237-5p 0 0 1
chr22:30579782|30580120 hsa-miR-1237-3p 0 0 1
chr22:30579782|30580120 hsa-miR-1248 0 0 1
chr22:30579782|30580120 hsa-miR-1262 0 0 1
chr22:30579782|30580120 hsa-miR-1266-5p 0 0 1
chr22:30579782|30580120 hsa-miR-1266-3p 0 0 1
chr22:30579782|30580120 hsa-miR-125a-3p 0 0 1
chr22:30579782|30580120 hsa-miR-491-5p 0 0 1
chr22:30579782|30580120 hsa-miR-486-3p 0 1 1
chr22:30579782|30580120 hsa-miR-1207-5p 0 0 1
chr22:30579782|30580120 hsa-miR-29b 0 0 1
chr22:30579782|30580120 hsa-miR-608 1 0 0
chr22:30579782|30580120 hsa-miR-661 1 0 0
chr22:30579782|30580120 hsa-miR-663a 1 0 0
chr22:30579782|30580120 hsa-miR-762 1 0 0
chr22:30579782|30580120 hsa-miR-759 0 1 0
chr22:30579782|30580120 hsa-miR-1182 0 1 0
chr22:30579782|30580120 hsa-miR-1293 1 0 0
chr22:30579782|30580120 hsa-miR-1295a 1 0 0
chr22:30579782|30580120 hsa-miR-2861 1 0 0
chr22:30579782|30580120 hsa-miR-3131 0 1 0
chr22:30579782|30580120 hsa-miR-3135a 1 0 0
chr22:30579782|30580120 hsa-miR-4298 1 0 0
chr22:30579782|30580120 hsa-miR-1268b 1 0 0
chr22:30579782|30580120 hsa-miR-4447 0 1 0
chr22:30579782|30580120 hsa-miR-4462 1 0 0
chr22:30579782|30580120 hsa-miR-4492 1 0 0
chr22:30579782|30580120 hsa-miR-4506 1 0 0
chr22:30579782|30580120 hsa-miR-4512 0 1 0
chr22:30579782|30580120 hsa-miR-4516 0 1 0
chr22:30579782|30580120 hsa-miR-4538 1 0 0
chr22:30579782|30580120 hsa-miR-4706 1 0 0
chr22:30579782|30580120 hsa-miR-4739 1 0 0
chr22:30579782|30580120 hsa-miR-4741 1 0 0
chr22:30579782|30580120 hsa-miR-4751 0 1 0
chr22:30579782|30580120 hsa-miR-4780 0 1 0
chr22:30579782|30580120 hsa-miR-5190 0 1 0
chr22:30579782|30580120 hsa-miR-5682 0 1 0
chr22:30579782|30580120 hsa-miR-6071 0 1 0
chr22:30579782|30580120 hsa-miR-6075 1 0 0
chr22:30579782|30580120 hsa-miR-6085 1 0 0
chr22:30579782|30580120 hsa-miR-6131 1 0 0
chr22:30579782|30580120 hsa-miR-7150 0 1 0
chr22:30579782|30580120 hsa-miR-8075 1 1 0
chr22:30579782|30580120 hsa-miR-8089 1 0 0
chr22:30579782|30580120 hsa-miR-12122 0 1 0
chr22:30579782|30580120 hsa-miR-6840-3p 0 1 0
chr22:30579782|30580120 hsa-miR-4665-3p 1 0 0
chr22:30579782|30580120 hsa-miR-7106-5p 1 0 0
chr22:30579782|30580120 hsa-miR-27a-5p 0 1 0
chr22:30579782|30580120 hsa-miR-192-3p 0 1 0
chr22:30579782|30580120 hsa-miR-6799-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6089 1 0 0
chr22:30579782|30580120 hsa-miR-6746-5p 1 1 0
chr22:30579782|30580120 hsa-miR-6730-5p 0 1 0
chr22:30579782|30580120 hsa-miR-6741-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6759-5p 1 0 0
chr22:30579782|30580120 hsa-miR-8069 1 0 0
chr22:30579782|30580120 hsa-miR-7845-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6748-5p 1 0 0
chr22:30579782|30580120 hsa-miR-185-3p 1 1 0
chr22:30579782|30580120 hsa-miR-6827-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6798-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6770-5p 0 1 0
chr22:30579782|30580120 hsa-miR-2467-3p 1 0 0
chr22:30579782|30580120 hsa-miR-1226-5p 1 1 0
chr22:30579782|30580120 hsa-miR-3127-5p 0 1 0
chr22:30579782|30580120 hsa-miR-3667-3p 0 1 0
chr22:30579782|30580120 hsa-miR-6749-5p 1 0 0
chr22:30579782|30580120 hsa-miR-4743-5p 1 0 0
chr22:30579782|30580120 hsa-miR-3616-3p 0 1 0
chr22:30579782|30580120 hsa-miR-193a-5p 0 1 0
chr22:30579782|30580120 hsa-miR-194-3p 1 0 0
chr22:30579782|30580120 hsa-miR-4742-5p 0 1 0
chr22:30579782|30580120 hsa-miR-6857-3p 0 1 0
chr22:30579782|30580120 hsa-miR-5585-5p 0 1 0
chr22:30579782|30580120 hsa-miR-412-5p 0 1 0
chr22:30579782|30580120 hsa-miR-6769b-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6812-5p 1 0 0
chr22:30579782|30580120 hsa-miR-5001-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6756-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6769a-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6803-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6751-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6836-5p 0 1 0
chr22:30579782|30580120 hsa-miR-10396b-5p 1 0 0
chr22:30579782|30580120 hsa-miR-1909-3p 1 0 0
chr22:30579782|30580120 hsa-miR-328-5p 1 0 0
chr22:30579782|30580120 hsa-miR-4701-3p 1 1 0
chr22:30579782|30580120 hsa-miR-6729-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6738-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6777-5p 0 1 0
chr22:30579782|30580120 hsa-miR-6846-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6848-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6858-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6889-5p 1 1 0
chr22:30579782|30580120 hsa-miR-939-5p 1 0 0
chr22:30579782|30580120 hsa-miR-6511b-5p 0 1 0
chr22:30579782|30580120 hsa-miR-6736-5p 1 1 0
chr22:30579782|30580120 hsa-miR-4747-5p 0 1 0
chr22:30579782|30580120 hsa-miR-4472 0 1 0
chr22:30579782|30580120 hsa-miR-6791-5p 1 0 0
chr22:30579782|30580120 hsa-miR-520a-5p 0 1 0
chr22:30579782|30580120 hsa-miR-1295b-5p 0 1 0
chr22:30579782|30580120 hsa-miR-9902 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:30579782|30580120
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MQQDPELPSVTRFCLPLCARCYVQPQWVFDSVNARLLLPVAEYFSGVQLPPHLSPFVTEKEGDYVPPEKLK
Nucleotide Sequence ATGCAGCAGGACCCTGAGTTGCCCTCTGTGACTCGTTTTTGCCTGCCACTCTGCGCCAGGTGCTACGTGCAGCCCCAGTGGGTGTTTGACTCAGTGAACGCCAGGCTCCTTCTCCCCGTGGCAGAGTACTTCTCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTTGTGACCGAGAAGGAAGGAGATTACGTTCCACCTGAGAAGCTGAAG
CircID chr22:30579782|30580120
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MSTGLGSRPQSLAGRPSRVLVRISGYPVSKALRCSRTLSCPL
Nucleotide Sequence TTGTCGACCGGCCTGGGCAGCAGACCTCAGTCATTGGCAGGTAGGCCCTCAAGGGTCCTCGTCCGGATTTCTGGGTATCCTGTCTCAAAGGCCCTGCGATGCAGCAGGACCCTGAGTTGCCCTCTGTGA
CircID chr22:30579782|30580120
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MGLHVAPGAEWQAKTSHRGQLRVLLHRRAFETGYPEIRTRTLEGLPAND
Nucleotide Sequence CTGGGGCTGCACGTAGCACCTGGCGCAGAGTGGCAGGCAAAAACGAGTCACAGAGGGCAACTCAGGGTCCTGCTGCATCGCAGGGCCTTTGAGACAGGATACCCAGAAATCCGGACGAGGACCCTTGAGGGCCTACCTGCCAATGACTGA
CircID chr22:30579782|30580120
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MAQSGRQKRVTEGNSGSCCIAGPLRQDTQKSGRGPLRAYLPMTEVCCPGRSTI
Nucleotide Sequence CTGGCGCAGAGTGGCAGGCAAAAACGAGTCACAGAGGGCAACTCAGGGTCCTGCTGCATCGCAGGGCCTTTGAGACAGGATACCCAGAAATCCGGACGAGGACCCTTGAGGGCCTACCTGCCAATGACTGAGGTCTGCTGCCCAGGCCGGTCGACAATCTGA
CircID chr22:30579782|30580120
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MPRGEGAWRSLSQTPTGAARSTWRRVAGKNESQRATQGPAASQGL
Nucleotide Sequence CTGCCACGGGGAGAAGGAGCCTGGCGTTCACTGAGTCAAACACCCACTGGGGCTGCACGTAGCACCTGGCGCAGAGTGGCAGGCAAAAACGAGTCACAGAGGGCAACTCAGGGTCCTGCTGCATCGCAGGGCCTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab