CircRNA Information

General Information
circRNA Basic Information
CircID chr22:30580596|30580839
Strand -
CircType exon
Host Gene ENSG00000100029.16;
Algorism CIRI2;
Sequence GGGGCACCTCTCGGTTCAGGAAGAACTTCAGGCCCTCAAAAAGCTTCTTGTGCTTCTCCTGCGCCTCCAGCTCCTTCCTGCGGTCTTCCTCCTGCGCTGACATCTCCTGTTGAGAAAGGGGCCAGGCCTCGCACCACCAGGGCTGCCCACCCCCACTGGAGGGCCAGGGCTGGAGATAACGTCCACTCCAGCTTCCTTCTAGATCCTGGATCCTGCCTTCAAAGGAAACTCCAAGGCCCCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:30580596|30580839 hsa-miR-122-5p 0 0 1
chr22:30580596|30580839 hsa-miR-122-3p 0 0 1
chr22:30580596|30580839 hsa-miR-328-5p 0 0 1
chr22:30580596|30580839 hsa-miR-328-3p 0 0 1
chr22:30580596|30580839 hsa-miR-432-5p 0 0 1
chr22:30580596|30580839 hsa-miR-432-3p 0 0 1
chr22:30580596|30580839 hsa-miR-608 1 1 1
chr22:30580596|30580839 hsa-miR-650 1 0 1
chr22:30580596|30580839 hsa-miR-421 0 0 1
chr22:30580596|30580839 hsa-miR-766-5p 0 0 1
chr22:30580596|30580839 hsa-miR-766-3p 0 0 1
chr22:30580596|30580839 hsa-miR-675-5p 0 0 1
chr22:30580596|30580839 hsa-miR-675-3p 0 0 1
chr22:30580596|30580839 hsa-miR-541-5p 0 0 1
chr22:30580596|30580839 hsa-miR-541-3p 0 0 1
chr22:30580596|30580839 hsa-miR-708-5p 0 0 1
chr22:30580596|30580839 hsa-miR-708-3p 0 0 1
chr22:30580596|30580839 hsa-miR-665 0 0 1
chr22:30580596|30580839 hsa-miR-940 0 1 1
chr22:30580596|30580839 hsa-miR-1200 0 0 1
chr22:30580596|30580839 hsa-miR-1291 0 0 1
chr22:30580596|30580839 hsa-miR-1304-5p 0 0 1
chr22:30580596|30580839 hsa-miR-1304-3p 0 0 1
chr22:30580596|30580839 hsa-miR-1252-5p 0 0 1
chr22:30580596|30580839 hsa-miR-1252-3p 0 0 1
chr22:30580596|30580839 hsa-miR-513c-5p 0 0 1
chr22:30580596|30580839 hsa-miR-513c-3p 0 0 1
chr22:30580596|30580839 hsa-miR-1825 0 0 1
chr22:30580596|30580839 hsa-miR-199a-5p 0 0 1
chr22:30580596|30580839 hsa-miR-654-5p 1 0 1
chr22:30580596|30580839 hsa-miR-28-5p 0 0 1
chr22:30580596|30580839 hsa-miR-876-3p 0 0 1
chr22:30580596|30580839 hsa-miR-199b-5p 0 0 1
chr22:30580596|30580839 hsa-miR-323-5p 0 0 1
chr22:30580596|30580839 hsa-miR-7 0 0 1
chr22:30580596|30580839 hsa-miR-612 1 0 0
chr22:30580596|30580839 hsa-miR-762 1 0 0
chr22:30580596|30580839 hsa-miR-1469 1 0 0
chr22:30580596|30580839 hsa-miR-3141 1 0 0
chr22:30580596|30580839 hsa-miR-3147 1 0 0
chr22:30580596|30580839 hsa-miR-3196 1 0 0
chr22:30580596|30580839 hsa-miR-3197 1 1 0
chr22:30580596|30580839 hsa-miR-3652 1 0 0
chr22:30580596|30580839 hsa-miR-3916 1 0 0
chr22:30580596|30580839 hsa-miR-1268b 1 0 0
chr22:30580596|30580839 hsa-miR-4434 0 1 0
chr22:30580596|30580839 hsa-miR-4443 0 1 0
chr22:30580596|30580839 hsa-miR-3135b 0 1 0
chr22:30580596|30580839 hsa-miR-4476 0 1 0
chr22:30580596|30580839 hsa-miR-4488 1 0 0
chr22:30580596|30580839 hsa-miR-4508 1 0 0
chr22:30580596|30580839 hsa-miR-4514 1 0 0
chr22:30580596|30580839 hsa-miR-4523 0 1 0
chr22:30580596|30580839 hsa-miR-4533 1 1 0
chr22:30580596|30580839 hsa-miR-4651 1 1 0
chr22:30580596|30580839 hsa-miR-4660 1 1 0
chr22:30580596|30580839 hsa-miR-4739 1 1 0
chr22:30580596|30580839 hsa-miR-4741 1 0 0
chr22:30580596|30580839 hsa-miR-5703 0 1 0
chr22:30580596|30580839 hsa-miR-6079 1 0 0
chr22:30580596|30580839 hsa-miR-6085 1 1 0
chr22:30580596|30580839 hsa-miR-6165 1 0 0
chr22:30580596|30580839 hsa-miR-6745 1 0 0
chr22:30580596|30580839 hsa-miR-6860 1 1 0
chr22:30580596|30580839 hsa-miR-7704 1 0 0
chr22:30580596|30580839 hsa-miR-671-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6861-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6894-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6720-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6510-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4768-3p 0 1 0
chr22:30580596|30580839 hsa-miR-6089 1 0 0
chr22:30580596|30580839 hsa-miR-6880-5p 1 0 0
chr22:30580596|30580839 hsa-miR-7847-3p 1 0 0
chr22:30580596|30580839 hsa-miR-4695-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6746-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4722-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6875-3p 0 1 0
chr22:30580596|30580839 hsa-miR-6727-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6759-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6742-5p 1 0 0
chr22:30580596|30580839 hsa-miR-3151-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6748-5p 1 0 0
chr22:30580596|30580839 hsa-miR-185-3p 1 0 0
chr22:30580596|30580839 hsa-miR-6732-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6760-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6782-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6514-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6888-5p 1 1 0
chr22:30580596|30580839 hsa-miR-7109-5p 1 0 0
chr22:30580596|30580839 hsa-miR-1226-5p 1 1 0
chr22:30580596|30580839 hsa-miR-4787-5p 1 0 0
chr22:30580596|30580839 hsa-miR-3925-3p 0 1 0
chr22:30580596|30580839 hsa-miR-6886-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6878-5p 0 1 0
chr22:30580596|30580839 hsa-miR-194-3p 0 1 0
chr22:30580596|30580839 hsa-miR-4800-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4661-3p 0 1 0
chr22:30580596|30580839 hsa-miR-605-3p 0 1 0
chr22:30580596|30580839 hsa-miR-2277-5p 1 1 0
chr22:30580596|30580839 hsa-miR-1296-3p 0 1 0
chr22:30580596|30580839 hsa-miR-6779-3p 0 1 0
chr22:30580596|30580839 hsa-miR-1207-5p 1 0 0
chr22:30580596|30580839 hsa-miR-1233-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4763-3p 1 0 0
chr22:30580596|30580839 hsa-miR-6787-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6816-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6893-5p 0 1 0
chr22:30580596|30580839 hsa-miR-5001-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6726-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6737-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6752-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6756-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6769a-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6803-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6813-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6819-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6842-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6851-5p 1 0 0
chr22:30580596|30580839 hsa-miR-7107-5p 1 0 0
chr22:30580596|30580839 hsa-miR-7110-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6722-3p 1 0 0
chr22:30580596|30580839 hsa-miR-6751-5p 1 1 0
chr22:30580596|30580839 hsa-miR-6797-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6879-5p 1 0 0
chr22:30580596|30580839 hsa-miR-7111-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6780b-5p 1 0 0
chr22:30580596|30580839 hsa-miR-1237-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4632-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4745-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6735-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6738-5p 1 0 0
chr22:30580596|30580839 hsa-miR-3187-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4436b-3p 1 0 0
chr22:30580596|30580839 hsa-miR-4697-5p 1 0 0
chr22:30580596|30580839 hsa-miR-4758-5p 1 0 0
chr22:30580596|30580839 hsa-miR-6876-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6766-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6762-5p 1 0 0
chr22:30580596|30580839 hsa-miR-518d-5p 0 1 0
chr22:30580596|30580839 hsa-miR-518e-5p 1 1 0
chr22:30580596|30580839 hsa-miR-518f-5p 0 1 0
chr22:30580596|30580839 hsa-miR-519a-5p 1 1 0
chr22:30580596|30580839 hsa-miR-519b-5p 1 1 0
chr22:30580596|30580839 hsa-miR-519c-5p 1 1 0
chr22:30580596|30580839 hsa-miR-520c-5p 0 1 0
chr22:30580596|30580839 hsa-miR-522-5p 1 1 0
chr22:30580596|30580839 hsa-miR-523-5p 1 1 0
chr22:30580596|30580839 hsa-miR-526a-5p 0 1 0
chr22:30580596|30580839 hsa-miR-6512-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:30580596|30580839
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MTSPVEKGARPRTTRAAHPHWRARAGDNVHSSFLLDPGSCLQRKLQGPT
Nucleotide Sequence CTGACATCTCCTGTTGAGAAAGGGGCCAGGCCTCGCACCACCAGGGCTGCCCACCCCCACTGGAGGGCCAGGGCTGGAGATAACGTCCACTCCAGCTTCCTTCTAGATCCTGGATCCTGCCTTCAAAGGAAACTCCAAGGCCCCACT
CircID chr22:30580596|30580839
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MLRKGPGLAPPGLPTPTGGPGLEITSTPASF
Nucleotide Sequence CTGTTGAGAAAGGGGCCAGGCCTCGCACCACCAGGGCTGCCCACCCCCACTGGAGGGCCAGGGCTGGAGATAACGTCCACTCCAGCTTCCTTCTAG
CircID chr22:30580596|30580839
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MSAQEEDRRKELEAQEKHKKLFEGLKFFLNREVP
Nucleotide Sequence ATGTCAGCGCAGGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAGGAGAAGCACAAGAAGCTTTTTGAGGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCC
CircID chr22:30580596|30580839
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MEWTLSPALALQWGWAALVVRGLAPFSTGDVSAGGRPQEGAGGAGEAQEAF
Nucleotide Sequence CTGGAGTGGACGTTATCTCCAGCCCTGGCCCTCCAGTGGGGGTGGGCAGCCCTGGTGGTGCGAGGCCTGGCCCCTTTCTCAACAGGAGATGTCAGCGCAGGAGGAAGACCGCAGGAAGGAGCTGGAGGCGCAGGAGAAGCACAAGAAGCTTTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab