CircRNA Information

General Information
circRNA Basic Information
CircID chr22:31278742|31278914
Strand +
CircType exon
Host Gene ENSG00000182541.16;
Algorism CIRI2;
Sequence CCTTTGAGCCATCAGTCTTTCTTTCGTCCACACACTTGAAGTCCTCCTGCACCCAGCTGGACTAGTGACTTCAGAGTTCACAGGCAGGTTCACCCTGGGATCCTGCCCAGCAGGTCCAGGTCACGCTGATTAGTGTAAGCAAGAGCCTCCCACAATCCACTGCCAGGGAGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:31278742|31278914 hsa-miR-26b-5p 0 0 1
chr22:31278742|31278914 hsa-miR-26b-3p 0 0 1
chr22:31278742|31278914 hsa-miR-34a-5p 0 0 1
chr22:31278742|31278914 hsa-miR-34a-3p 0 0 1
chr22:31278742|31278914 hsa-miR-224-5p 0 0 1
chr22:31278742|31278914 hsa-miR-224-3p 0 0 1
chr22:31278742|31278914 hsa-miR-370-5p 0 0 1
chr22:31278742|31278914 hsa-miR-370-3p 0 0 1
chr22:31278742|31278914 hsa-miR-449a 0 1 1
chr22:31278742|31278914 hsa-miR-492 0 1 1
chr22:31278742|31278914 hsa-miR-554 0 0 1
chr22:31278742|31278914 hsa-miR-595 0 0 1
chr22:31278742|31278914 hsa-miR-612 0 1 1
chr22:31278742|31278914 hsa-miR-619-5p 0 0 1
chr22:31278742|31278914 hsa-miR-619-3p 0 0 1
chr22:31278742|31278914 hsa-miR-631 0 0 1
chr22:31278742|31278914 hsa-miR-449b-5p 0 0 1
chr22:31278742|31278914 hsa-miR-449b-3p 0 0 1
chr22:31278742|31278914 hsa-miR-1286 0 0 1
chr22:31278742|31278914 hsa-miR-1297 0 0 1
chr22:31278742|31278914 hsa-miR-1207-3p 0 0 1
chr22:31278742|31278914 hsa-miR-34c-5p 0 0 1
chr22:31278742|31278914 hsa-miR-644 0 0 1
chr22:31278742|31278914 hsa-miR-26a 0 0 1
chr22:31278742|31278914 hsa-miR-1285 0 0 1
chr22:31278742|31278914 hsa-miR-24 0 0 1
chr22:31278742|31278914 hsa-miR-147 0 0 1
chr22:31278742|31278914 hsa-miR-623 1 0 0
chr22:31278742|31278914 hsa-miR-4259 1 0 0
chr22:31278742|31278914 hsa-miR-3661 0 1 0
chr22:31278742|31278914 hsa-miR-3911 1 1 0
chr22:31278742|31278914 hsa-miR-4535 0 1 0
chr22:31278742|31278914 hsa-miR-4721 1 0 0
chr22:31278742|31278914 hsa-miR-5787 1 0 0
chr22:31278742|31278914 hsa-miR-6860 0 1 0
chr22:31278742|31278914 hsa-miR-8056 0 1 0
chr22:31278742|31278914 hsa-miR-12115 1 0 0
chr22:31278742|31278914 hsa-miR-146a-3p 0 1 0
chr22:31278742|31278914 hsa-miR-6861-5p 1 0 0
chr22:31278742|31278914 hsa-miR-6894-5p 1 0 0
chr22:31278742|31278914 hsa-miR-3692-5p 0 1 0
chr22:31278742|31278914 hsa-miR-3934-5p 1 0 0
chr22:31278742|31278914 hsa-miR-7847-3p 1 0 0
chr22:31278742|31278914 hsa-miR-6867-5p 1 1 0
chr22:31278742|31278914 hsa-miR-4722-5p 1 1 0
chr22:31278742|31278914 hsa-miR-7154-3p 0 1 0
chr22:31278742|31278914 hsa-miR-6741-5p 1 1 0
chr22:31278742|31278914 hsa-miR-6721-5p 0 1 0
chr22:31278742|31278914 hsa-miR-5589-5p 0 1 0
chr22:31278742|31278914 hsa-miR-6776-5p 1 1 0
chr22:31278742|31278914 hsa-miR-6748-5p 1 0 0
chr22:31278742|31278914 hsa-miR-6772-5p 1 0 0
chr22:31278742|31278914 hsa-miR-2467-5p 0 1 0
chr22:31278742|31278914 hsa-miR-6798-5p 1 0 0
chr22:31278742|31278914 hsa-miR-30b-3p 0 1 0
chr22:31278742|31278914 hsa-miR-1229-5p 1 1 0
chr22:31278742|31278914 hsa-miR-3691-5p 1 0 0
chr22:31278742|31278914 hsa-miR-3690 0 1 0
chr22:31278742|31278914 hsa-miR-4800-5p 1 0 0
chr22:31278742|31278914 hsa-miR-4661-3p 0 1 0
chr22:31278742|31278914 hsa-miR-4680-5p 0 1 0
chr22:31278742|31278914 hsa-miR-1233-5p 1 1 0
chr22:31278742|31278914 hsa-miR-1273h-5p 0 1 0
chr22:31278742|31278914 hsa-miR-4763-3p 1 0 0
chr22:31278742|31278914 hsa-miR-6769b-5p 1 0 0
chr22:31278742|31278914 hsa-miR-6756-5p 1 0 0
chr22:31278742|31278914 hsa-miR-6779-5p 0 1 0
chr22:31278742|31278914 hsa-miR-6797-5p 1 0 0
chr22:31278742|31278914 hsa-miR-1915-3p 0 1 0
chr22:31278742|31278914 hsa-miR-449c-5p 0 1 0
chr22:31278742|31278914 hsa-miR-675-5p 1 0 0
chr22:31278742|31278914 hsa-miR-3187-5p 0 1 0
chr22:31278742|31278914 hsa-miR-3940-5p 1 1 0
chr22:31278742|31278914 hsa-miR-6736-5p 1 0 0
chr22:31278742|31278914 hsa-miR-6849-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:31278742|31278914
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MHPAGLVTSEFTGRFTLGSCPAGPGHAD
Nucleotide Sequence CTGCACCCAGCTGGACTAGTGACTTCAGAGTTCACAGGCAGGTTCACCCTGGGATCCTGCCCAGCAGGTCCAGGTCACGCTGATTAG
CircID chr22:31278742|31278914
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MAVDCGRLLLTLISVTWTCWAGSQGEPACEL
Nucleotide Sequence CTGGCAGTGGATTGTGGGAGGCTCTTGCTTACACTAATCAGCGTGACCTGGACCTGCTGGGCAGGATCCCAGGGTGAACCTGCCTGTGAACTCTGA
CircID chr22:31278742|31278914
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MPVNSEVTSPAGCRRTSSVWTKERLMAQR
Nucleotide Sequence CTGCCTGTGAACTCTGAAGTCACTAGTCCAGCTGGGTGCAGGAGGACTTCAAGTGTGTGGACGAAAGAAAGACTGATGGCTCAAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab