CircRNA Information

General Information
circRNA Basic Information
CircID chr22:31462932|31463133
Strand -
CircType exon
Host Gene ENSG00000184708.17;
Algorism find_circ;CIRI2;DCC;
Sequence AGAGAGTTTGGAGATAGTAAGCGTGTCTTTGGTGAGCGTAGAAGAAATGATTCTTACACAGAAGAAGAACCAGAGTGGTTCTCTGCTGGACCCACAAGTCAGTCTGAAACCATCGAACTGACTGGCTTTGATGATAAGATACTAGAAGAAGATCACAAAGGGAGAAAAAGAACAAGGCGACGGACAGCCTCTGTGAAGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:31462932|31463133 hsa-miR-187-5p 0 0 1
chr22:31462932|31463133 hsa-miR-187-3p 0 0 1
chr22:31462932|31463133 hsa-miR-511-5p 0 0 1
chr22:31462932|31463133 hsa-miR-511-3p 0 0 1
chr22:31462932|31463133 hsa-miR-600 0 0 1
chr22:31462932|31463133 hsa-miR-620 0 0 1
chr22:31462932|31463133 hsa-miR-622 0 0 1
chr22:31462932|31463133 hsa-miR-892b 0 0 1
chr22:31462932|31463133 hsa-miR-1287-5p 0 0 1
chr22:31462932|31463133 hsa-miR-1287-3p 0 0 1
chr22:31462932|31463133 hsa-miR-1270 1 1 1
chr22:31462932|31463133 hsa-miR-1252-5p 0 0 1
chr22:31462932|31463133 hsa-miR-1252-3p 0 0 1
chr22:31462932|31463133 hsa-miR-125b-2-3p 0 1 1
chr22:31462932|31463133 hsa-miR-140-5p 0 0 1
chr22:31462932|31463133 hsa-miR-203a-5p 0 1 1
chr22:31462932|31463133 hsa-miR-181a-3p 0 1 1
chr22:31462932|31463133 hsa-miR-181c-3p 0 1 1
chr22:31462932|31463133 hsa-miR-28-3p 0 0 1
chr22:31462932|31463133 hsa-miR-548b-3p 0 0 1
chr22:31462932|31463133 hsa-miR-9 0 0 1
chr22:31462932|31463133 hsa-miR-768-5p 0 0 1
chr22:31462932|31463133 hsa-miR-1253 1 1 0
chr22:31462932|31463133 hsa-miR-3161 0 1 0
chr22:31462932|31463133 hsa-miR-3175 1 0 0
chr22:31462932|31463133 hsa-miR-3185 1 0 0
chr22:31462932|31463133 hsa-miR-4273 0 1 0
chr22:31462932|31463133 hsa-miR-3916 0 1 0
chr22:31462932|31463133 hsa-miR-4458 1 0 0
chr22:31462932|31463133 hsa-miR-4502 1 0 0
chr22:31462932|31463133 hsa-miR-4739 1 1 0
chr22:31462932|31463133 hsa-miR-4748 1 0 0
chr22:31462932|31463133 hsa-miR-6088 1 0 0
chr22:31462932|31463133 hsa-miR-6090 1 0 0
chr22:31462932|31463133 hsa-miR-6124 1 0 0
chr22:31462932|31463133 hsa-miR-8085 1 0 0
chr22:31462932|31463133 hsa-miR-7106-5p 1 0 0
chr22:31462932|31463133 hsa-miR-224-5p 0 1 0
chr22:31462932|31463133 hsa-miR-3692-5p 0 1 0
chr22:31462932|31463133 hsa-miR-6867-5p 1 0 0
chr22:31462932|31463133 hsa-miR-6746-5p 1 0 0
chr22:31462932|31463133 hsa-miR-6798-5p 1 0 0
chr22:31462932|31463133 hsa-miR-6760-5p 0 1 0
chr22:31462932|31463133 hsa-miR-6740-5p 1 0 0
chr22:31462932|31463133 hsa-miR-185-5p 1 0 0
chr22:31462932|31463133 hsa-let-7b-5p 1 1 0
chr22:31462932|31463133 hsa-miR-877-5p 0 1 0
chr22:31462932|31463133 hsa-miR-6824-5p 1 0 0
chr22:31462932|31463133 hsa-miR-3162-5p 0 1 0
chr22:31462932|31463133 hsa-miR-6878-5p 0 1 0
chr22:31462932|31463133 hsa-let-7c-5p 1 0 0
chr22:31462932|31463133 hsa-miR-597-3p 0 1 0
chr22:31462932|31463133 hsa-miR-6882-5p 0 1 0
chr22:31462932|31463133 hsa-miR-4699-5p 0 1 0
chr22:31462932|31463133 hsa-miR-98-5p 1 1 0
chr22:31462932|31463133 hsa-miR-10400-5p 1 0 0
chr22:31462932|31463133 hsa-miR-4649-5p 1 0 0
chr22:31462932|31463133 hsa-miR-6731-5p 1 0 0
chr22:31462932|31463133 hsa-miR-4700-5p 1 0 0
chr22:31462932|31463133 hsa-miR-4716-3p 0 1 0
chr22:31462932|31463133 hsa-miR-1185-1-3p 0 1 0
chr22:31462932|31463133 hsa-miR-1185-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:31462932|31463133
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence LFFFSLCDLLLVSYHQSQSVRWFQTDLWVQQRTTLVLLLCKNHFFYAHQRHAYYLQTL
Nucleotide Sequence TTGTTCTTTTTCTCCCTTTGTGATCTTCTTCTAGTATCTTATCATCAAAGCCAGTCAGTTCGATGGTTTCAGACTGACTTGTGGGTCCAGCAGAGAACCACTCTGGTTCTTCTTCTGTGTAAGAATCATTTCTTCTACGCTCACCAAAGACACGCTTACTATCTCCAAACTCTC
CircID chr22:31462932|31463133
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MSVALFFFSLCDLLLVSYHQSQSVRWFQTDLWVQQRTTLVLLLCKNHFFYAHQRHAYYLQTL
Nucleotide Sequence CTGTCCGTCGCCTTGTTCTTTTTCTCCCTTTGTGATCTTCTTCTAGTATCTTATCATCAAAGCCAGTCAGTTCGATGGTTTCAGACTGACTTGTGGGTCCAGCAGAGAACCACTCTGGTTCTTCTTCTGTGTAAGAATCATTTCTTCTACGCTCACCAAAGACACGCTTACTATCTCCAAACTCTC
CircID chr22:31462932|31463133
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MTCGSSREPLWFFFCVRIISSTLTKDTLTISKLS
Nucleotide Sequence CTGACTTGTGGGTCCAGCAGAGAACCACTCTGGTTCTTCTTCTGTGTAAGAATCATTTCTTCTACGCTCACCAAAGACACGCTTACTATCTCCAAACTCTCT
CircID chr22:31462932|31463133
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MTGFDDKILEEDHKGRKRTRRRTASVKE
Nucleotide Sequence CTGACTGGCTTTGATGATAAGATACTAGAAGAAGATCACAAAGGGAGAAAAAGAACAAGGCGACGGACAGCCTCTGTGAAGGAA
CircID chr22:31462932|31463133
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MEIVSVSLVSVEEMILTQKKNQSGSLLDPQVSLKPSN
Nucleotide Sequence TTGGAGATAGTAAGCGTGTCTTTGGTGAGCGTAGAAGAAATGATTCTTACACAGAAGAAGAACCAGAGTGGTTCTCTGCTGGACCCACAAGTCAGTCTGAAACCATCGAACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr22:31462932|31463133 RBM5 1 0 0
chr22:31462932|31463133 U2AF2 7 1 0
chr22:31462932|31463133 ELAVL1 4 4 1
chr22:31462932|31463133 DHX9 1 0 0
chr22:31462932|31463133 FAM120A 1 0 1
chr22:31462932|31463133 CNBP 2 0 0
chr22:31462932|31463133 UPF1 0 1 0
chr22:31462932|31463133 TAF15 1 0 0
chr22:31462932|31463133 FMR1 14 0 2
chr22:31462932|31463133 CPSF6 2 0 1
chr22:31462932|31463133 TROVE2 1 0 0
chr22:31462932|31463133 FUS 1 0 0
chr22:31462932|31463133 DGCR8 0 0 2
chr22:31462932|31463133 SRSF1 4 1 1
chr22:31462932|31463133 NOP58 3 2 2
chr22:31462932|31463133 U2AF1 2 0 0
chr22:31462932|31463133 NOP56 2 0 0
chr22:31462932|31463133 SRSF9 2 0 0
chr22:31462932|31463133 DDX54 5 1 5
chr22:31462932|31463133 RBM10 2 0 0
chr22:31462932|31463133 PCBP2 1 0 0
chr22:31462932|31463133 FIP1L1 0 1 0
chr22:31462932|31463133 HNRNPC 0 2 0
chr22:31462932|31463133 TRA2A 2 2 4
chr22:31462932|31463133 ZNF184 2 0 1
chr22:31462932|31463133 HNRNPA1 2 1 0
chr22:31462932|31463133 LIN28B 1 0 2
chr22:31462932|31463133 RANGAP1 1 0 0
chr22:31462932|31463133 FXR1 1 0 2
chr22:31462932|31463133 FXR2 1 1 1
chr22:31462932|31463133 NUMA1 0 0 1
chr22:31462932|31463133 IGF2BP2 5 2 4
chr22:31462932|31463133 TARDBP 1 1 0
chr22:31462932|31463133 RBFOX2 2 1 0
chr22:31462932|31463133 PRPF8 1 0 0
chr22:31462932|31463133 EIF4G2 1 0 0
chr22:31462932|31463133 CSTF2T 2 0 0
chr22:31462932|31463133 BCCIP 1 0 0
chr22:31462932|31463133 SAFB2 1 0 0
chr22:31462932|31463133 AIFM1 2 0 0
chr22:31462932|31463133 AGO1 0 0 1
chr22:31462932|31463133 EIF4A3 8 4 3
chr22:31462932|31463133 FBL 3 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab