CircRNA Information

General Information
circRNA Basic Information
CircID chr22:33295512|33295829
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGAGGATTTAGCAATCTACCTTAGGGTGACAATACGTGGGCAGAGAGGAAGGAAGGAGCCACCTGTGCTGCTCACTCTGGAGGCCACCTCAGCACAGCCCTGTCCTCCTCTTGTCTCATCCCTAAACATAAAGGCCAGGGAATAGGGTTTGCTCGATTCTACTCCAGTTGTCTAGGAAATGAGCTCTTGGCTGACTGGCTTCCAGGAGCTTTGTGGGGACAACAGCAAGGACTTGCAAATGAGGGAGACAGGGCAGCCCACAGAGTGCCACTGTAGAATACACACATAATACATGAGGTCAGACATGGGCATGTCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:33295512|33295829 hsa-miR-15a-5p 0 0 1
chr22:33295512|33295829 hsa-miR-15a-3p 0 0 1
chr22:33295512|33295829 hsa-miR-15b-5p 0 0 1
chr22:33295512|33295829 hsa-miR-15b-3p 0 0 1
chr22:33295512|33295829 hsa-miR-195-5p 0 0 1
chr22:33295512|33295829 hsa-miR-195-3p 0 0 1
chr22:33295512|33295829 hsa-miR-335-5p 0 0 1
chr22:33295512|33295829 hsa-miR-335-3p 0 0 1
chr22:33295512|33295829 hsa-miR-384 0 0 1
chr22:33295512|33295829 hsa-miR-424-5p 0 0 1
chr22:33295512|33295829 hsa-miR-424-3p 0 0 1
chr22:33295512|33295829 hsa-miR-497-5p 0 0 1
chr22:33295512|33295829 hsa-miR-497-3p 0 0 1
chr22:33295512|33295829 hsa-miR-552-5p 0 0 1
chr22:33295512|33295829 hsa-miR-552-3p 0 0 1
chr22:33295512|33295829 hsa-miR-575 0 1 1
chr22:33295512|33295829 hsa-miR-579-5p 0 0 1
chr22:33295512|33295829 hsa-miR-579-3p 0 0 1
chr22:33295512|33295829 hsa-miR-605-5p 0 0 1
chr22:33295512|33295829 hsa-miR-605-3p 0 0 1
chr22:33295512|33295829 hsa-miR-630 0 0 1
chr22:33295512|33295829 hsa-miR-662 0 1 1
chr22:33295512|33295829 hsa-miR-874-5p 0 0 1
chr22:33295512|33295829 hsa-miR-874-3p 0 0 1
chr22:33295512|33295829 hsa-miR-1255a 0 0 1
chr22:33295512|33295829 hsa-miR-139-5p 0 1 1
chr22:33295512|33295829 hsa-miR-671-5p 0 0 1
chr22:33295512|33295829 hsa-miR-146b-3p 0 0 1
chr22:33295512|33295829 hsa-miR-339-5p 0 0 1
chr22:33295512|33295829 hsa-miR-525-5p 0 1 1
chr22:33295512|33295829 hsa-miR-502-5p 0 0 1
chr22:33295512|33295829 hsa-miR-654-3p 0 0 1
chr22:33295512|33295829 hsa-miR-324-3p 0 0 1
chr22:33295512|33295829 hsa-miR-520a-5p 0 1 1
chr22:33295512|33295829 hsa-miR-450b-5p 0 0 1
chr22:33295512|33295829 hsa-miR-1274a 0 0 1
chr22:33295512|33295829 hsa-miR-16 0 0 1
chr22:33295512|33295829 hsa-miR-1255b 0 0 1
chr22:33295512|33295829 hsa-miR-549 0 0 1
chr22:33295512|33295829 hsa-miR-608 1 0 0
chr22:33295512|33295829 hsa-miR-1471 1 0 0
chr22:33295512|33295829 hsa-miR-4298 1 1 0
chr22:33295512|33295829 hsa-miR-4305 0 1 0
chr22:33295512|33295829 hsa-miR-4256 0 1 0
chr22:33295512|33295829 hsa-miR-4265 0 1 0
chr22:33295512|33295829 hsa-miR-1587 0 1 0
chr22:33295512|33295829 hsa-miR-4641 0 1 0
chr22:33295512|33295829 hsa-miR-4675 0 1 0
chr22:33295512|33295829 hsa-miR-4739 1 0 0
chr22:33295512|33295829 hsa-miR-4741 1 1 0
chr22:33295512|33295829 hsa-miR-6079 0 1 0
chr22:33295512|33295829 hsa-miR-7974 0 1 0
chr22:33295512|33295829 hsa-miR-12128 0 1 0
chr22:33295512|33295829 hsa-miR-134-3p 1 1 0
chr22:33295512|33295829 hsa-miR-18a-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6894-5p 1 0 0
chr22:33295512|33295829 hsa-miR-5187-5p 0 1 0
chr22:33295512|33295829 hsa-miR-6089 1 0 0
chr22:33295512|33295829 hsa-miR-6757-5p 0 1 0
chr22:33295512|33295829 hsa-miR-7154-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6762-3p 1 0 0
chr22:33295512|33295829 hsa-miR-6726-3p 1 0 0
chr22:33295512|33295829 hsa-miR-6868-3p 0 1 0
chr22:33295512|33295829 hsa-miR-3190-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6798-5p 1 0 0
chr22:33295512|33295829 hsa-miR-6782-5p 1 0 0
chr22:33295512|33295829 hsa-miR-6740-5p 0 1 0
chr22:33295512|33295829 hsa-miR-4786-3p 0 1 0
chr22:33295512|33295829 hsa-miR-4640-5p 1 0 0
chr22:33295512|33295829 hsa-miR-3667-3p 0 1 0
chr22:33295512|33295829 hsa-miR-7111-3p 0 1 0
chr22:33295512|33295829 hsa-miR-4446-3p 0 1 0
chr22:33295512|33295829 hsa-miR-7162-3p 0 1 0
chr22:33295512|33295829 hsa-miR-7112-5p 1 0 0
chr22:33295512|33295829 hsa-miR-4778-3p 0 1 0
chr22:33295512|33295829 hsa-miR-891a-3p 0 1 0
chr22:33295512|33295829 hsa-miR-5004-5p 0 1 0
chr22:33295512|33295829 hsa-miR-3124-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6779-3p 1 1 0
chr22:33295512|33295829 hsa-miR-6847-3p 1 0 0
chr22:33295512|33295829 hsa-miR-4763-3p 1 1 0
chr22:33295512|33295829 hsa-miR-6812-5p 1 1 0
chr22:33295512|33295829 hsa-miR-6865-5p 0 1 0
chr22:33295512|33295829 hsa-miR-6815-5p 1 1 0
chr22:33295512|33295829 hsa-miR-6842-5p 1 0 0
chr22:33295512|33295829 hsa-miR-6851-5p 1 0 0
chr22:33295512|33295829 hsa-miR-6797-5p 1 0 0
chr22:33295512|33295829 hsa-miR-3620-5p 0 1 0
chr22:33295512|33295829 hsa-miR-6856-5p 1 0 0
chr22:33295512|33295829 hsa-miR-6799-3p 1 0 0
chr22:33295512|33295829 hsa-miR-5008-3p 0 1 0
chr22:33295512|33295829 hsa-miR-4664-5p 1 0 0
chr22:33295512|33295829 hsa-miR-3059-5p 0 1 0
chr22:33295512|33295829 hsa-miR-4723-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6769b-3p 0 1 0
chr22:33295512|33295829 hsa-miR-5699-3p 0 1 0
chr22:33295512|33295829 hsa-miR-6507-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:33295512|33295829
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MSSSCLIPKHKGQGIGFARFYSSCLGNELLADWLPGALWGQQQGLANEGDRAAHRVPL
Nucleotide Sequence CTGTCCTCCTCTTGTCTCATCCCTAAACATAAAGGCCAGGGAATAGGGTTTGCTCGATTCTACTCCAGTTGTCTAGGAAATGAGCTCTTGGCTGACTGGCTTCCAGGAGCTTTGTGGGGACAACAGCAAGGACTTGCAAATGAGGGAGACAGGGCAGCCCACAGAGTGCCACTGTAG
CircID chr22:33295512|33295829
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MLTLEATSAQPCPPLVSSLNIKARE
Nucleotide Sequence CTGCTCACTCTGGAGGCCACCTCAGCACAGCCCTGTCCTCCTCTTGTCTCATCCCTAAACATAAAGGCCAGGGAATAG
CircID chr22:33295512|33295829
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MSSWLTGFQELCGDNSKDLQMRETGQPTECHCRIHT
Nucleotide Sequence ATGAGCTCTTGGCTGACTGGCTTCCAGGAGCTTTGTGGGGACAACAGCAAGGACTTGCAAATGAGGGAGACAGGGCAGCCCACAGAGTGCCACTGTAGAATACACACATAA
CircID chr22:33295512|33295829
ORF Type ORF4
Protein Length 52
Nucleotide Length 159
Protein Sequence MTCPCLTSCIMCVFYSGTLWAALSPSFASPCCCPHKAPGSQSAKSSFPRQLE
Nucleotide Sequence ATGACATGCCCATGTCTGACCTCATGTATTATGTGTGTATTCTACAGTGGCACTCTGTGGGCTGCCCTGTCTCCCTCATTTGCAAGTCCTTGCTGTTGTCCCCACAAAGCTCCTGGAAGCCAGTCAGCCAAGAGCTCATTTCCTAGACAACTGGAGTAG
CircID chr22:33295512|33295829
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MPCLPHLQVLAVVPTKLLEASQPRAHFLDNWSRIEQTLFPGLYV
Nucleotide Sequence CTGCCCTGTCTCCCTCATTTGCAAGTCCTTGCTGTTGTCCCCACAAAGCTCCTGGAAGCCAGTCAGCCAAGAGCTCATTTCCTAGACAACTGGAGTAGAATCGAGCAAACCCTATTCCCTGGCCTTTATGTTTAG
CircID chr22:33295512|33295829
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MPMSDLMYYVCILQWHSVGCPVSLICKSLLLSPQSSWKPVSQELIS
Nucleotide Sequence ATGCCCATGTCTGACCTCATGTATTATGTGTGTATTCTACAGTGGCACTCTGTGGGCTGCCCTGTCTCCCTCATTTGCAAGTCCTTGCTGTTGTCCCCACAAAGCTCCTGGAAGCCAGTCAGCCAAGAGCTCATTTCCTAG
CircID chr22:33295512|33295829
ORF Type ORF7
Protein Length 40
Nucleotide Length 123
Protein Sequence MAFMFRDETRGGQGCAEVASRVSSTGGSFLPLCPRIVTLR
Nucleotide Sequence CTGGCCTTTATGTTTAGGGATGAGACAAGAGGAGGACAGGGCTGTGCTGAGGTGGCCTCCAGAGTGAGCAGCACAGGTGGCTCCTTCCTTCCTCTCTGCCCACGTATTGTCACCCTAAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab