CircRNA Information

General Information
circRNA Basic Information
CircID chr22:36265656|36265889
Strand -
CircType exon
Host Gene ENSG00000100342.19;
Algorism CIRI2;
Sequence CAACTCACACGAGGCATTGGGAAGGACATCCGTGCCCTCAGACGAGCCAGAGCCAATCTTCAGTCAGTACCGCATGCCTCAGCCTCACGCCCCCGGGTCACTGAGCCAATCTCAGCTGAAAGCGGTGAACAGGTGGAGAGGGTTAATGAACCCAGCATCCTGGAAATGAGCAGAGGAGTCAAGCTCACGGATGTGGCCCCTGTAAGCTTCTTTCTTGTGCTGGATGTAGTCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:36265656|36265889 hsa-miR-149-5p 0 0 1
chr22:36265656|36265889 hsa-miR-149-3p 0 0 1
chr22:36265656|36265889 hsa-miR-564 0 0 1
chr22:36265656|36265889 hsa-miR-571 0 0 1
chr22:36265656|36265889 hsa-miR-600 0 0 1
chr22:36265656|36265889 hsa-miR-665 0 0 1
chr22:36265656|36265889 hsa-miR-760 1 0 1
chr22:36265656|36265889 hsa-miR-1827 0 0 1
chr22:36265656|36265889 hsa-miR-485-5p 0 0 1
chr22:36265656|36265889 hsa-miR-1207-3p 0 0 1
chr22:36265656|36265889 hsa-miR-767-3p 0 0 1
chr22:36265656|36265889 hsa-miR-338-3p 0 0 1
chr22:36265656|36265889 hsa-miR-1268 0 0 1
chr22:36265656|36265889 hsa-miR-24 0 0 1
chr22:36265656|36265889 hsa-miR-219-1-3p 0 0 1
chr22:36265656|36265889 hsa-miR-637 1 0 0
chr22:36265656|36265889 hsa-miR-892b 1 0 0
chr22:36265656|36265889 hsa-miR-663b 1 0 0
chr22:36265656|36265889 hsa-miR-1268b 1 0 0
chr22:36265656|36265889 hsa-miR-4449 1 0 0
chr22:36265656|36265889 hsa-miR-4488 1 0 0
chr22:36265656|36265889 hsa-miR-5787 1 0 0
chr22:36265656|36265889 hsa-miR-8077 1 0 0
chr22:36265656|36265889 hsa-miR-8089 1 0 0
chr22:36265656|36265889 hsa-miR-150-3p 1 0 0
chr22:36265656|36265889 hsa-miR-1247-3p 1 0 0
chr22:36265656|36265889 hsa-miR-6822-3p 1 0 0
chr22:36265656|36265889 hsa-miR-8069 1 0 0
chr22:36265656|36265889 hsa-miR-127-3p 1 0 0
chr22:36265656|36265889 hsa-miR-6732-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6850-5p 1 0 0
chr22:36265656|36265889 hsa-miR-1226-5p 1 0 0
chr22:36265656|36265889 hsa-miR-3191-5p 1 0 0
chr22:36265656|36265889 hsa-miR-4787-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6789-5p 1 0 0
chr22:36265656|36265889 hsa-miR-1180-3p 1 0 0
chr22:36265656|36265889 hsa-miR-4746-3p 1 0 0
chr22:36265656|36265889 hsa-miR-509-3p 1 0 0
chr22:36265656|36265889 hsa-miR-1306-3p 1 0 0
chr22:36265656|36265889 hsa-miR-4763-3p 1 0 0
chr22:36265656|36265889 hsa-miR-6775-5p 1 0 0
chr22:36265656|36265889 hsa-miR-5001-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6752-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6756-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6813-5p 1 0 0
chr22:36265656|36265889 hsa-miR-7110-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6751-5p 1 0 0
chr22:36265656|36265889 hsa-miR-1237-5p 1 0 0
chr22:36265656|36265889 hsa-miR-1909-3p 1 0 0
chr22:36265656|36265889 hsa-miR-6848-5p 1 0 0
chr22:36265656|36265889 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr22:36265656|36265889
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MEMSRGVKLTDVAPVSFFLVLDVVY
Nucleotide Sequence CTGGAAATGAGCAGAGGAGTCAAGCTCACGGATGTGGCCCCTGTAAGCTTCTTTCTTGTGCTGGATGTAGTCTAC

CircID chr22:36265656|36265889
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MGRTSVPSDEPEPIFSQYRMPQPHAPGSLSQSQLKAVNRWRGLMNPASWK
Nucleotide Sequence TTGGGAAGGACATCCGTGCCCTCAGACGAGCCAGAGCCAATCTTCAGTCAGTACCGCATGCCTCAGCCTCACGCCCCCGGGTCACTGAGCCAATCTCAGCTGAAAGCGGTGAACAGGTGGAGAGGGTTAATGAACCCAGCATCCTGGAAATGA

CircID chr22:36265656|36265889
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MTPLLISRMLGSLTLSTCSPLSAEIGSVTRGREAEACGTD
Nucleotide Sequence TTGACTCCTCTGCTCATTTCCAGGATGCTGGGTTCATTAACCCTCTCCACCTGTTCACCGCTTTCAGCTGAGATTGGCTCAGTGACCCGGGGGCGTGAGGCTGAGGCATGCGGTACTGACTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites