CircRNA Information

General Information
circRNA Basic Information
CircID chr22:36267015|36267299
Strand +
CircType exon
Host Gene ENSG00000100342.19;
Algorism CIRI2;
Sequence CATGGCCATGGCCCACCACCTGCCCTTCAGTGTTCAAGCAGGGGACATGCACCCTTTAGTAACCTGGAGGGGACCCATCACATGACAACCACCCCAATGACCATCATCAGGAAGCCGCTGCCTGACTGAGATATGCCCCCAGGAGGACAAGGGAGAGTGGATGCTGGAAAGACAGGGCAGGGGACCATCACCAGGGAAAGACTTCATTCTTCGGAGGACATTGAACCTGGGGCTGGGTCTGTAGTGGAGCCGCTGTTTCTTCTCCTGTATCCAACTGTTCTAACT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:36267015|36267299 hsa-miR-141-5p 0 0 1
chr22:36267015|36267299 hsa-miR-141-3p 0 0 1
chr22:36267015|36267299 hsa-miR-200a-5p 0 0 1
chr22:36267015|36267299 hsa-miR-200a-3p 0 0 1
chr22:36267015|36267299 hsa-miR-511-5p 0 0 1
chr22:36267015|36267299 hsa-miR-511-3p 0 0 1
chr22:36267015|36267299 hsa-miR-608 -28 1 1
chr22:36267015|36267299 hsa-miR-616-5p 0 0 1
chr22:36267015|36267299 hsa-miR-616-3p 0 0 1
chr22:36267015|36267299 hsa-miR-623 -17 0 1
chr22:36267015|36267299 hsa-miR-637 -20 1 1
chr22:36267015|36267299 hsa-miR-1264 -4 0 1
chr22:36267015|36267299 hsa-miR-874-5p 0 0 1
chr22:36267015|36267299 hsa-miR-874-3p 0 0 1
chr22:36267015|36267299 hsa-miR-541-5p 0 0 1
chr22:36267015|36267299 hsa-miR-541-3p 0 0 1
chr22:36267015|36267299 hsa-miR-1200 -2 0 1
chr22:36267015|36267299 hsa-miR-1293 -12 0 1
chr22:36267015|36267299 hsa-miR-1253 -10 1 1
chr22:36267015|36267299 hsa-miR-1261 -9 0 1
chr22:36267015|36267299 hsa-miR-885-3p -11 0 1
chr22:36267015|36267299 hsa-miR-146b-3p -8 0 1
chr22:36267015|36267299 hsa-miR-339-5p -17 1 1
chr22:36267015|36267299 hsa-miR-654-5p -6 1 1
chr22:36267015|36267299 hsa-miR-331-3p -9 0 1
chr22:36267015|36267299 hsa-miR-876-3p -2 0 1
chr22:36267015|36267299 hsa-miR-338-3p -12 1 1
chr22:36267015|36267299 hsa-miR-342-5p -17 0 1
chr22:36267015|36267299 hsa-miR-516a-3p -5 0 1
chr22:36267015|36267299 hsa-miR-1274a 0 0 1
chr22:36267015|36267299 hsa-miR-453 0 0 1
chr22:36267015|36267299 hsa-miR-3141 -17 1 0
chr22:36267015|36267299 hsa-miR-4271 -12 1 0
chr22:36267015|36267299 hsa-miR-3665 -18 1 0
chr22:36267015|36267299 hsa-miR-4434 -4 1 0
chr22:36267015|36267299 hsa-miR-4483 -12 1 0
chr22:36267015|36267299 hsa-miR-4516 -11 1 0
chr22:36267015|36267299 hsa-miR-12120 -9 1 0
chr22:36267015|36267299 hsa-miR-4726-3p -13 1 0
chr22:36267015|36267299 hsa-miR-6770-5p -10 1 0
chr22:36267015|36267299 hsa-miR-1343-3p -12 1 0
chr22:36267015|36267299 hsa-miR-6830-3p -20 1 0
chr22:36267015|36267299 hsa-miR-4446-5p -17 1 0
chr22:36267015|36267299 hsa-miR-660-3p -11 1 0
chr22:36267015|36267299 hsa-miR-6887-3p -6 1 0
chr22:36267015|36267299 hsa-miR-6755-3p -8 1 0
chr22:36267015|36267299 hsa-miR-6777-3p -14 1 0
chr22:36267015|36267299 hsa-miR-4639-3p -11 1 0
chr22:36267015|36267299 hsa-miR-6780b-3p -12 1 0
chr22:36267015|36267299 hsa-miR-885-5p -13 1 0
chr22:36267015|36267299 hsa-miR-6737-5p -22 1 0
chr22:36267015|36267299 hsa-miR-6879-5p -20 1 0
chr22:36267015|36267299 hsa-miR-4685-3p -11 1 0
chr22:36267015|36267299 hsa-miR-4632-5p -21 1 0
chr22:36267015|36267299 hsa-miR-6801-3p -15 1 0
chr22:36267015|36267299 hsa-miR-6810-3p -22 1 0
chr22:36267015|36267299 hsa-miR-3130-5p -10 1 0
chr22:36267015|36267299 hsa-miR-323b-5p -14 1 0
chr22:36267015|36267299 hsa-miR-5006-3p -14 1 0
chr22:36267015|36267299 hsa-miR-6843-3p -15 1 0
chr22:36267015|36267299 hsa-miR-494-5p -13 1 0
chr22:36267015|36267299 hsa-miR-5699-3p -12 1 0
chr22:36267015|36267299 hsa-miR-410-5p -15 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:36267015|36267299
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MPPGGQGRVDAGKTGQGTITRERLHSSEDIEPGAGSVVEPLFLLLYPTVLT
Nucleotide Sequence ATGCCCCCAGGAGGACAAGGGAGAGTGGATGCTGGAAAGACAGGGCAGGGGACCATCACCAGGGAAAGACTTCATTCTTCGGAGGACATTGAACCTGGGGCTGGGTCTGTAGTGGAGCCGCTGTTTCTTCTCCTGTATCCAACTGTTCTAACT
CircID chr22:36267015|36267299
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MAMAHHLPFSVQAGDMHPLVTWRGPIT
Nucleotide Sequence ATGGCCATGGCCCACCACCTGCCCTTCAGTGTTCAAGCAGGGGACATGCACCCTTTAGTAACCTGGAGGGGACCCATCACATGA
CircID chr22:36267015|36267299
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MTEICPQEDKGEWMLERQGRGPSPGKDFILRRTLNLGLGL
Nucleotide Sequence CTGACTGAGATATGCCCCCAGGAGGACAAGGGAGAGTGGATGCTGGAAAGACAGGGCAGGGGACCATCACCAGGGAAAGACTTCATTCTTCGGAGGACATTGAACCTGGGGCTGGGTCTGTAG
CircID chr22:36267015|36267299
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MRYAPRRTRESGCWKDRAGDHHQGKTSFFGGH
Nucleotide Sequence CTGAGATATGCCCCCAGGAGGACAAGGGAGAGTGGATGCTGGAAAGACAGGGCAGGGGACCATCACCAGGGAAAGACTTCATTCTTCGGAGGACATTGA
CircID chr22:36267015|36267299
ORF Type ORF5
Protein Length 57
Nucleotide Length 174
Protein Sequence MKSFPGDGPLPCLSSIHSPLSSWGHISVRQRLPDDGHWGGCHVMGPLQVTKGCMSPA
Nucleotide Sequence ATGAAGTCTTTCCCTGGTGATGGTCCCCTGCCCTGTCTTTCCAGCATCCACTCTCCCTTGTCCTCCTGGGGGCATATCTCAGTCAGGCAGCGGCTTCCTGATGATGGTCATTGGGGTGGTTGTCATGTGATGGGTCCCCTCCAGGTTACTAAAGGGTGCATGTCCCCTGCTTGA
CircID chr22:36267015|36267299
ORF Type ORF6
Protein Length 38
Nucleotide Length 117
Protein Sequence MVMVPCPVFPASTLPCPPGGISQSGSGFLMMVIGVVVM
Nucleotide Sequence CTGGTGATGGTCCCCTGCCCTGTCTTTCCAGCATCCACTCTCCCTTGTCCTCCTGGGGGCATATCTCAGTCAGGCAGCGGCTTCCTGATGATGGTCATTGGGGTGGTTGTCATGTGA
CircID chr22:36267015|36267299
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MDTGEETAAPLQTQPQVQCPPKNEVFPW
Nucleotide Sequence TTGGATACAGGAGAAGAAACAGCGGCTCCACTACAGACCCAGCCCCAGGTTCAATGTCCTCCGAAGAATGAAGTCTTTCCCTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab