CircRNA Information

General Information
circRNA Basic Information
CircID chr22:36291986|36292136
Strand -
CircType exon
Host Gene ENSG00000100345.19;
Algorism CIRI2;
Sequence CTGGTCAAACTTCTTCTGCTTCTTCTCCAGGTTGCACGCGCTCTGGCGCTGGTGGTCCAGGTCCACCAGCAGGTCGTCCAGCTCCTGCTGCAGCCGCGTCTTGGTCTTCTCCAGCTTGTCGTAGGCGGCCACCTTCTCCTCGTGCCGCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:36291986|36292136 hsa-miR-107 0 0 1
chr22:36291986|36292136 hsa-miR-214-5p 0 0 1
chr22:36291986|36292136 hsa-miR-214-3p 0 0 1
chr22:36291986|36292136 hsa-miR-370-5p 0 0 1
chr22:36291986|36292136 hsa-miR-370-3p 0 0 1
chr22:36291986|36292136 hsa-miR-492 0 0 1
chr22:36291986|36292136 hsa-miR-619-5p 0 0 1
chr22:36291986|36292136 hsa-miR-619-3p 0 0 1
chr22:36291986|36292136 hsa-miR-631 0 1 1
chr22:36291986|36292136 hsa-miR-298 1 0 1
chr22:36291986|36292136 hsa-miR-708-5p 0 0 1
chr22:36291986|36292136 hsa-miR-708-3p 0 0 1
chr22:36291986|36292136 hsa-miR-1226-5p 0 0 1
chr22:36291986|36292136 hsa-miR-1226-3p 0 0 1
chr22:36291986|36292136 hsa-miR-1253 0 1 1
chr22:36291986|36292136 hsa-miR-1184 0 1 1
chr22:36291986|36292136 hsa-miR-490-3p 0 1 1
chr22:36291986|36292136 hsa-miR-28-5p 0 1 1
chr22:36291986|36292136 hsa-miR-151-5p 0 0 1
chr22:36291986|36292136 hsa-miR-103 0 0 1
chr22:36291986|36292136 hsa-miR-138 0 0 1
chr22:36291986|36292136 hsa-miR-663a 1 0 0
chr22:36291986|36292136 hsa-miR-762 1 0 0
chr22:36291986|36292136 hsa-miR-765 1 1 0
chr22:36291986|36292136 hsa-miR-3125 1 0 0
chr22:36291986|36292136 hsa-miR-3131 1 0 0
chr22:36291986|36292136 hsa-miR-3139 0 1 0
chr22:36291986|36292136 hsa-miR-3185 1 0 0
chr22:36291986|36292136 hsa-miR-4300 0 1 0
chr22:36291986|36292136 hsa-miR-4271 1 0 0
chr22:36291986|36292136 hsa-miR-3916 1 0 0
chr22:36291986|36292136 hsa-miR-4434 1 1 0
chr22:36291986|36292136 hsa-miR-3135b 0 1 0
chr22:36291986|36292136 hsa-miR-4479 1 0 0
chr22:36291986|36292136 hsa-miR-4516 1 1 0
chr22:36291986|36292136 hsa-miR-4531 0 1 0
chr22:36291986|36292136 hsa-miR-4533 1 0 0
chr22:36291986|36292136 hsa-miR-4535 0 1 0
chr22:36291986|36292136 hsa-miR-4689 1 0 0
chr22:36291986|36292136 hsa-miR-4706 0 1 0
chr22:36291986|36292136 hsa-miR-4767 1 0 0
chr22:36291986|36292136 hsa-miR-4784 0 1 0
chr22:36291986|36292136 hsa-miR-5191 1 0 0
chr22:36291986|36292136 hsa-miR-5703 1 1 0
chr22:36291986|36292136 hsa-miR-6088 1 0 0
chr22:36291986|36292136 hsa-miR-6165 0 1 0
chr22:36291986|36292136 hsa-miR-8089 1 0 0
chr22:36291986|36292136 hsa-miR-3692-5p 0 1 0
chr22:36291986|36292136 hsa-miR-8071 0 1 0
chr22:36291986|36292136 hsa-miR-139-3p 1 0 0
chr22:36291986|36292136 hsa-miR-4786-5p 0 1 0
chr22:36291986|36292136 hsa-miR-7847-3p 1 0 0
chr22:36291986|36292136 hsa-miR-6746-5p 1 0 0
chr22:36291986|36292136 hsa-miR-4722-5p 1 1 0
chr22:36291986|36292136 hsa-miR-6820-5p 1 0 0
chr22:36291986|36292136 hsa-miR-6770-5p 0 1 0
chr22:36291986|36292136 hsa-miR-6760-5p 1 0 0
chr22:36291986|36292136 hsa-miR-2467-3p 1 0 0
chr22:36291986|36292136 hsa-miR-3150b-3p 0 1 0
chr22:36291986|36292136 hsa-miR-3690 0 1 0
chr22:36291986|36292136 hsa-miR-516b-5p 1 1 0
chr22:36291986|36292136 hsa-miR-4776-5p 0 1 0
chr22:36291986|36292136 hsa-miR-518c-5p 1 0 0
chr22:36291986|36292136 hsa-miR-10400-5p 1 0 0
chr22:36291986|36292136 hsa-miR-5001-5p 1 0 0
chr22:36291986|36292136 hsa-miR-6726-5p 1 1 0
chr22:36291986|36292136 hsa-miR-6815-5p 1 0 0
chr22:36291986|36292136 hsa-miR-11181-3p 1 0 0
chr22:36291986|36292136 hsa-miR-6788-5p 1 0 0
chr22:36291986|36292136 hsa-miR-3620-5p 1 0 0
chr22:36291986|36292136 hsa-miR-6780b-5p 1 0 0
chr22:36291986|36292136 hsa-miR-4685-5p 1 0 0
chr22:36291986|36292136 hsa-miR-4725-3p 1 0 0
chr22:36291986|36292136 hsa-miR-4726-5p 1 0 0
chr22:36291986|36292136 hsa-miR-6858-5p 1 1 0
chr22:36291986|36292136 hsa-miR-1910-3p 0 1 0
chr22:36291986|36292136 hsa-miR-6856-5p 1 0 0
chr22:36291986|36292136 hsa-miR-7151-3p 1 0 0
chr22:36291986|36292136 hsa-miR-4667-5p 1 1 0
chr22:36291986|36292136 hsa-miR-6791-5p 1 0 0
chr22:36291986|36292136 hsa-miR-6893-3p 0 1 0
chr22:36291986|36292136 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:36291986|36292136
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence LVKLLLLLLQVARALALVVQVHQQVVQLLLQPRLGLLQLVVGGHLLLVPL
Nucleotide Sequence CTGGTCAAACTTCTTCTGCTTCTTCTCCAGGTTGCACGCGCTCTGGCGCTGGTGGTCCAGGTCCACCAGCAGGTCGTCCAGCTCCTGCTGCAGCCGCGTCTTGGTCTTCTCCAGCTTGTCGTAGGCGGCCACCTTCTCCTCGTGCCGCTG
CircID chr22:36291986|36292136
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MHALWRWWSRSTSRSSSSCCSRVLVFSSLS
Nucleotide Sequence TTGCACGCGCTCTGGCGCTGGTGGTCCAGGTCCACCAGCAGGTCGTCCAGCTCCTGCTGCAGCCGCGTCTTGGTCTTCTCCAGCTTGTCGTAG
CircID chr22:36291986|36292136
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MEKTKTRLQQELDDLLVDLDHQRQSACNLEKKQKKFDQ
Nucleotide Sequence CTGGAGAAGACCAAGACGCGGCTGCAGCAGGAGCTGGACGACCTGCTGGTGGACCTGGACCACCAGCGCCAGAGCGCGTGCAACCTGGAGAAGAAGCAGAAGAAGTTTGACCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab