CircRNA Information

General Information
circRNA Basic Information
CircID chr22:37128468|37128596
Strand +
CircType exon
Host Gene ENSG00000100385.12;
Algorism CIRI2;
Sequence CCCTACTCAGAGGAAGACCCTGATGAGGGTGTGGCCGGGGCACCCACAGGGTCTTCCCCCCAACCCCTGCAGCCTCTGTCAGGGGAGGACGACGCCTACTGCACCTTCCCCTCCAGGGATGACCTGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:37128468|37128596 hsa-miR-18a-5p 0 0 1
chr22:37128468|37128596 hsa-miR-18a-3p 0 0 1
chr22:37128468|37128596 hsa-miR-10a-5p 0 0 1
chr22:37128468|37128596 hsa-miR-10a-3p 0 0 1
chr22:37128468|37128596 hsa-miR-10b-5p 0 0 1
chr22:37128468|37128596 hsa-miR-10b-3p 0 0 1
chr22:37128468|37128596 hsa-miR-214-5p 0 0 1
chr22:37128468|37128596 hsa-miR-214-3p 0 0 1
chr22:37128468|37128596 hsa-miR-18b-5p 0 0 1
chr22:37128468|37128596 hsa-miR-18b-3p 0 0 1
chr22:37128468|37128596 hsa-miR-504-5p 0 0 1
chr22:37128468|37128596 hsa-miR-504-3p 0 0 1
chr22:37128468|37128596 hsa-miR-625-5p 0 0 1
chr22:37128468|37128596 hsa-miR-625-3p 0 0 1
chr22:37128468|37128596 hsa-miR-1182 0 0 1
chr22:37128468|37128596 hsa-miR-1205 0 1 1
chr22:37128468|37128596 hsa-miR-1275 0 0 1
chr22:37128468|37128596 hsa-miR-485-5p 0 0 1
chr22:37128468|37128596 hsa-miR-193a-5p 0 0 1
chr22:37128468|37128596 hsa-miR-331-3p 0 0 1
chr22:37128468|37128596 hsa-miR-7 0 0 1
chr22:37128468|37128596 hsa-miR-623 1 1 0
chr22:37128468|37128596 hsa-miR-663b 1 0 0
chr22:37128468|37128596 hsa-miR-4271 0 1 0
chr22:37128468|37128596 hsa-miR-3621 1 0 0
chr22:37128468|37128596 hsa-miR-4488 1 0 0
chr22:37128468|37128596 hsa-miR-4526 0 1 0
chr22:37128468|37128596 hsa-miR-4651 1 0 0
chr22:37128468|37128596 hsa-miR-5698 1 1 0
chr22:37128468|37128596 hsa-miR-134-3p 0 1 0
chr22:37128468|37128596 hsa-miR-6749-3p 0 1 0
chr22:37128468|37128596 hsa-miR-154-5p 1 0 0
chr22:37128468|37128596 hsa-miR-323a-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6825-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6799-5p 1 0 0
chr22:37128468|37128596 hsa-miR-7109-5p 1 1 0
chr22:37128468|37128596 hsa-miR-3186-5p 0 1 0
chr22:37128468|37128596 hsa-miR-296-3p 0 1 0
chr22:37128468|37128596 hsa-miR-149-3p 1 0 0
chr22:37128468|37128596 hsa-miR-431-3p 1 0 0
chr22:37128468|37128596 hsa-miR-1273h-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6816-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6775-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6803-5p 1 0 0
chr22:37128468|37128596 hsa-miR-6722-3p 1 1 0
chr22:37128468|37128596 hsa-miR-6751-5p 1 0 0
chr22:37128468|37128596 hsa-miR-7111-5p 1 0 0
chr22:37128468|37128596 hsa-miR-5196-5p 1 1 0
chr22:37128468|37128596 hsa-miR-6780b-5p 1 1 0
chr22:37128468|37128596 hsa-miR-1909-3p 1 1 0
chr22:37128468|37128596 hsa-miR-328-5p 1 0 0
chr22:37128468|37128596 hsa-miR-4725-3p 1 1 0
chr22:37128468|37128596 hsa-miR-6795-5p 1 1 0
chr22:37128468|37128596 hsa-miR-6883-5p 1 1 0
chr22:37128468|37128596 hsa-miR-6887-5p 0 1 0
chr22:37128468|37128596 hsa-miR-939-5p 1 0 0
chr22:37128468|37128596 hsa-miR-10396a-3p 0 1 0
chr22:37128468|37128596 hsa-miR-10396b-3p 0 1 0
chr22:37128468|37128596 hsa-miR-6855-5p 0 1 0
chr22:37128468|37128596 hsa-miR-4747-5p 0 1 0
chr22:37128468|37128596 hsa-miR-4723-3p 1 0 0
chr22:37128468|37128596 hsa-miR-10394-5p 0 1 0
chr22:37128468|37128596 hsa-miR-487b-5p 1 0 0
chr22:37128468|37128596 hsa-miR-10397-5p 1 1 0
chr22:37128468|37128596 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:37128468|37128596
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MMRVWPGHPQGLPPNPCSLCQGRTTPTAPSPPGMTC
Nucleotide Sequence CTGATGAGGGTGTGGCCGGGGCACCCACAGGGTCTTCCCCCCAACCCCTGCAGCCTCTGTCAGGGGAGGACGACGCCTACTGCACCTTCCCCTCCAGGGATGACCTGC
CircID chr22:37128468|37128596
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MTEAAGVGGKTLWVPRPHPHQGLPLSR
Nucleotide Sequence CTGACAGAGGCTGCAGGGGTTGGGGGGAAGACCCTGTGGGTGCCCCGGCCACACCCTCATCAGGGTCTTCCTCTGAGTAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab