CircRNA Information

General Information
circRNA Basic Information
CircID chr22:37225480|37225649
Strand +
CircType exon
Host Gene ENSG00000128340.13;
Algorism CIRI2;
Sequence CTTCAGGGATGGGGCTCTTACTCCCTCCTGAGGCCAGCTGCTCTAATATCGATGGTCCTGCTTGCCAGAGAGTTCCTCTACCCAGCAAAAATGAGTGTCTCAGAAGTGTGCTCCTCTGGCCTCAGTTCTCCTCTTTTGGAACAACATAAAACAAATTTAATTTTCTACGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:37225480|37225649 hsa-miR-31-5p 0 0 1
chr22:37225480|37225649 hsa-miR-31-3p 0 0 1
chr22:37225480|37225649 hsa-miR-146a-5p 0 0 1
chr22:37225480|37225649 hsa-miR-146a-3p 0 0 1
chr22:37225480|37225649 hsa-miR-326 0 0 1
chr22:37225480|37225649 hsa-miR-583 0 0 1
chr22:37225480|37225649 hsa-miR-646 1 1 1
chr22:37225480|37225649 hsa-miR-877-5p 0 0 1
chr22:37225480|37225649 hsa-miR-877-3p 0 0 1
chr22:37225480|37225649 hsa-miR-1286 1 1 1
chr22:37225480|37225649 hsa-miR-129-5p 0 0 1
chr22:37225480|37225649 hsa-miR-1225-3p 0 0 1
chr22:37225480|37225649 hsa-miR-1207-3p 0 1 1
chr22:37225480|37225649 hsa-miR-125a-5p 0 0 1
chr22:37225480|37225649 hsa-miR-330-5p 0 0 1
chr22:37225480|37225649 hsa-miR-146b-5p 0 1 1
chr22:37225480|37225649 hsa-miR-513a-3p 0 0 1
chr22:37225480|37225649 hsa-miR-125b 0 0 1
chr22:37225480|37225649 hsa-miR-650 1 0 0
chr22:37225480|37225649 hsa-miR-3125 0 1 0
chr22:37225480|37225649 hsa-miR-3128 0 1 0
chr22:37225480|37225649 hsa-miR-3132 1 1 0
chr22:37225480|37225649 hsa-miR-4298 1 0 0
chr22:37225480|37225649 hsa-miR-4510 0 1 0
chr22:37225480|37225649 hsa-miR-4514 1 0 0
chr22:37225480|37225649 hsa-miR-4530 1 0 0
chr22:37225480|37225649 hsa-miR-4673 1 0 0
chr22:37225480|37225649 hsa-miR-4739 1 0 0
chr22:37225480|37225649 hsa-miR-4779 0 1 0
chr22:37225480|37225649 hsa-miR-4784 0 1 0
chr22:37225480|37225649 hsa-miR-5093 1 0 0
chr22:37225480|37225649 hsa-miR-6081 1 0 0
chr22:37225480|37225649 hsa-miR-6127 0 1 0
chr22:37225480|37225649 hsa-miR-6165 1 0 0
chr22:37225480|37225649 hsa-miR-6860 1 0 0
chr22:37225480|37225649 hsa-miR-8089 1 0 0
chr22:37225480|37225649 hsa-miR-6861-5p 1 1 0
chr22:37225480|37225649 hsa-miR-181c-3p 0 1 0
chr22:37225480|37225649 hsa-miR-6510-5p 1 0 0
chr22:37225480|37225649 hsa-miR-766-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6089 1 0 0
chr22:37225480|37225649 hsa-miR-6880-5p 1 0 0
chr22:37225480|37225649 hsa-miR-4722-5p 1 0 0
chr22:37225480|37225649 hsa-miR-1301-3p 1 1 0
chr22:37225480|37225649 hsa-miR-197-5p 1 1 0
chr22:37225480|37225649 hsa-miR-3189-5p 0 1 0
chr22:37225480|37225649 hsa-miR-5589-5p 1 0 0
chr22:37225480|37225649 hsa-miR-3150b-3p 0 1 0
chr22:37225480|37225649 hsa-miR-1226-5p 1 0 0
chr22:37225480|37225649 hsa-miR-4640-5p 1 1 0
chr22:37225480|37225649 hsa-miR-6753-5p 1 0 0
chr22:37225480|37225649 hsa-miR-4690-5p 1 0 0
chr22:37225480|37225649 hsa-miR-3191-5p 0 1 0
chr22:37225480|37225649 hsa-miR-3160-3p 0 1 0
chr22:37225480|37225649 hsa-miR-6824-5p 1 0 0
chr22:37225480|37225649 hsa-miR-181b-5p 0 1 0
chr22:37225480|37225649 hsa-miR-525-5p 0 1 0
chr22:37225480|37225649 hsa-miR-6792-5p 1 0 0
chr22:37225480|37225649 hsa-miR-520g-5p 0 1 0
chr22:37225480|37225649 hsa-miR-3664-3p 0 1 0
chr22:37225480|37225649 hsa-miR-1207-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6754-5p 1 0 0
chr22:37225480|37225649 hsa-miR-1249-5p 1 1 0
chr22:37225480|37225649 hsa-miR-6774-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6797-5p 0 1 0
chr22:37225480|37225649 hsa-miR-6875-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6879-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6836-5p 1 0 0
chr22:37225480|37225649 hsa-miR-4726-5p 1 1 0
chr22:37225480|37225649 hsa-miR-6735-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6794-5p 1 0 0
chr22:37225480|37225649 hsa-miR-939-5p 1 1 0
chr22:37225480|37225649 hsa-miR-6511b-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6856-5p 0 1 0
chr22:37225480|37225649 hsa-miR-4646-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6891-5p 0 1 0
chr22:37225480|37225649 hsa-miR-4667-5p 1 0 0
chr22:37225480|37225649 hsa-miR-6859-5p 1 1 0
chr22:37225480|37225649 hsa-miR-5588-5p 1 0 0
chr22:37225480|37225649 hsa-miR-7153-5p 0 1 0
chr22:37225480|37225649 hsa-miR-181d-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:37225480|37225649
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MRPAALISMVLLAREFLYPAKMSVSEVCSSGLSSPLLEQHKTNLIFY
Nucleotide Sequence CTGAGGCCAGCTGCTCTAATATCGATGGTCCTGCTTGCCAGAGAGTTCCTCTACCCAGCAAAAATGAGTGTCTCAGAAGTGTGCTCCTCTGGCCTCAGTTCTCCTCTTTTGGAACAACATAAAACAAATTTAATTTTCTAC
CircID chr22:37225480|37225649
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MGLLLPPEASCSNIDGPACQRVPLPSKNECLRSVLLWPQFSSFGTT
Nucleotide Sequence ATGGGGCTCTTACTCCCTCCTGAGGCCAGCTGCTCTAATATCGATGGTCCTGCTTGCCAGAGAGTTCCTCTACCCAGCAAAAATGAGTGTCTCAGAAGTGTGCTCCTCTGGCCTCAGTTCTCCTCTTTTGGAACAACATAA
CircID chr22:37225480|37225649
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MRHSFLLGRGTLWQAGPSILEQLASGGSKSPIPE
Nucleotide Sequence CTGAGACACTCATTTTTGCTGGGTAGAGGAACTCTCTGGCAAGCAGGACCATCGATATTAGAGCAGCTGGCCTCAGGAGGGAGTAAGAGCCCCATCCCTGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab