CircRNA Information

General Information
circRNA Basic Information
CircID chr22:37758001|37758138
Strand +
CircType exon
Host Gene ENSG00000100101.14;
Algorism CIRI2;
Sequence CTCCTTCTCCAGTGCCTCGTGGCCGTCACTTGGGGGCCCTCGGCGCTCTCCGCGGCTTTGGTTGAGCAGGGCAGTGAGGGGCACCCGCTTATTCTCCCGCAGGGGCAGCTTCTCCAGCTCCTGCCACTTCTTCTCGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:37758001|37758138 hsa-miR-22-5p 0 0 1
chr22:37758001|37758138 hsa-miR-22-3p 0 0 1
chr22:37758001|37758138 hsa-miR-874-5p 0 0 1
chr22:37758001|37758138 hsa-miR-874-3p 0 0 1
chr22:37758001|37758138 hsa-miR-708-5p 0 0 1
chr22:37758001|37758138 hsa-miR-708-3p 0 0 1
chr22:37758001|37758138 hsa-miR-1253 0 1 1
chr22:37758001|37758138 hsa-miR-296-5p 0 0 1
chr22:37758001|37758138 hsa-miR-146b-3p 0 0 1
chr22:37758001|37758138 hsa-miR-339-3p 0 0 1
chr22:37758001|37758138 hsa-miR-28-5p 0 0 1
chr22:37758001|37758138 hsa-miR-767-3p 0 0 1
chr22:37758001|37758138 hsa-miR-1207-5p 0 0 1
chr22:37758001|37758138 hsa-miR-324-3p 0 0 1
chr22:37758001|37758138 hsa-miR-886-3p 0 0 1
chr22:37758001|37758138 hsa-miR-638 1 0 0
chr22:37758001|37758138 hsa-miR-920 0 1 0
chr22:37758001|37758138 hsa-miR-1913 1 0 0
chr22:37758001|37758138 hsa-miR-2110 0 1 0
chr22:37758001|37758138 hsa-miR-3139 0 1 0
chr22:37758001|37758138 hsa-miR-3185 1 0 0
chr22:37758001|37758138 hsa-miR-4531 0 1 0
chr22:37758001|37758138 hsa-miR-3960 1 0 0
chr22:37758001|37758138 hsa-miR-4656 1 0 0
chr22:37758001|37758138 hsa-miR-4706 0 1 0
chr22:37758001|37758138 hsa-miR-4721 1 1 0
chr22:37758001|37758138 hsa-miR-4739 1 0 0
chr22:37758001|37758138 hsa-miR-4767 1 0 0
chr22:37758001|37758138 hsa-miR-6085 1 1 0
chr22:37758001|37758138 hsa-miR-6088 1 0 0
chr22:37758001|37758138 hsa-miR-7150 0 1 0
chr22:37758001|37758138 hsa-miR-9899 1 0 0
chr22:37758001|37758138 hsa-miR-12121 1 0 0
chr22:37758001|37758138 hsa-miR-4665-3p 1 0 0
chr22:37758001|37758138 hsa-miR-210-5p 1 0 0
chr22:37758001|37758138 hsa-miR-139-3p 1 0 0
chr22:37758001|37758138 hsa-miR-6746-5p 0 1 0
chr22:37758001|37758138 hsa-miR-6882-3p 1 0 0
chr22:37758001|37758138 hsa-miR-5088-5p 1 0 0
chr22:37758001|37758138 hsa-miR-6772-3p 0 1 0
chr22:37758001|37758138 hsa-miR-1226-5p 1 0 0
chr22:37758001|37758138 hsa-miR-7113-3p 1 0 0
chr22:37758001|37758138 hsa-miR-3648 1 1 0
chr22:37758001|37758138 hsa-miR-6769a-3p 0 1 0
chr22:37758001|37758138 hsa-miR-6826-3p 0 1 0
chr22:37758001|37758138 hsa-miR-4749-3p 1 1 0
chr22:37758001|37758138 hsa-miR-6890-3p 0 1 0
chr22:37758001|37758138 hsa-miR-4763-3p 1 1 0
chr22:37758001|37758138 hsa-miR-6775-5p 0 1 0
chr22:37758001|37758138 hsa-miR-1343-5p 1 0 0
chr22:37758001|37758138 hsa-miR-1909-3p 1 0 0
chr22:37758001|37758138 hsa-miR-939-5p 1 0 0
chr22:37758001|37758138 hsa-miR-6856-5p 1 0 0
chr22:37758001|37758138 hsa-miR-6799-3p 1 0 0
chr22:37758001|37758138 hsa-miR-1914-3p 1 0 0
chr22:37758001|37758138 hsa-miR-6801-3p 1 0 0
chr22:37758001|37758138 hsa-miR-6805-3p 1 0 0
chr22:37758001|37758138 hsa-miR-6810-3p 1 0 0
chr22:37758001|37758138 hsa-miR-10400-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:37758001|37758138
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MVEQGSEGHPLILPQGQLLQLLPLLLD
Nucleotide Sequence TTGGTTGAGCAGGGCAGTGAGGGGCACCCGCTTATTCTCCCGCAGGGGCAGCTTCTCCAGCTCCTGCCACTTCTTCTCGAT
CircID chr22:37758001|37758138
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MSRAVRGTRLFSRRGSFSSSCHFFS
Nucleotide Sequence TTGAGCAGGGCAGTGAGGGGCACCCGCTTATTCTCCCGCAGGGGCAGCTTCTCCAGCTCCTGCCACTTCTTCTCG
CircID chr22:37758001|37758138
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKE
Nucleotide Sequence CTGGAGAAGCTGCCCCTGCGGGAGAATAAGCGGGTGCCCCTCACTGCCCTGCTCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGTGACGGCCACGAGGCACTGGAGAAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab