CircRNA Information

General Information
circRNA Basic Information
CircID chr22:37925878|37926010
Strand -
CircType exon
Host Gene ENSG00000100139.12;
Algorism CIRI2;
Sequence AAGGAGGAAGAGGCTCCAGCTGCACCCAGCCTGGCCACCAGCCCTGCCCTGGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGTACGGCATCACCCCTACCAGCAGCCCCAAGACAAAGAAGCGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:37925878|37926010 hsa-miR-431-5p 0 0 1
chr22:37925878|37926010 hsa-miR-431-3p 0 0 1
chr22:37925878|37926010 hsa-miR-511-5p 0 0 1
chr22:37925878|37926010 hsa-miR-511-3p 0 0 1
chr22:37925878|37926010 hsa-miR-609 0 0 1
chr22:37925878|37926010 hsa-miR-635 0 0 1
chr22:37925878|37926010 hsa-miR-1301-5p 0 0 1
chr22:37925878|37926010 hsa-miR-1301-3p 0 0 1
chr22:37925878|37926010 hsa-miR-1236-5p 0 0 1
chr22:37925878|37926010 hsa-miR-1236-3p 0 0 1
chr22:37925878|37926010 hsa-miR-663b 1 0 1
chr22:37925878|37926010 hsa-miR-1262 0 0 1
chr22:37925878|37926010 hsa-miR-1207-3p 0 0 1
chr22:37925878|37926010 hsa-miR-1207-5p 1 0 1
chr22:37925878|37926010 hsa-miR-342-5p 0 0 1
chr22:37925878|37926010 hsa-miR-138 0 0 1
chr22:37925878|37926010 hsa-miR-608 1 0 0
chr22:37925878|37926010 hsa-miR-663a 1 0 0
chr22:37925878|37926010 hsa-miR-762 1 0 0
chr22:37925878|37926010 hsa-miR-1182 1 0 0
chr22:37925878|37926010 hsa-miR-2861 1 0 0
chr22:37925878|37926010 hsa-miR-3131 1 0 0
chr22:37925878|37926010 hsa-miR-3196 1 0 0
chr22:37925878|37926010 hsa-miR-4270 1 0 0
chr22:37925878|37926010 hsa-miR-1268b 1 0 0
chr22:37925878|37926010 hsa-miR-4440 1 0 0
chr22:37925878|37926010 hsa-miR-4449 1 0 0
chr22:37925878|37926010 hsa-miR-4466 1 0 0
chr22:37925878|37926010 hsa-miR-4488 1 0 0
chr22:37925878|37926010 hsa-miR-4489 1 0 0
chr22:37925878|37926010 hsa-miR-4498 1 0 0
chr22:37925878|37926010 hsa-miR-4507 1 0 0
chr22:37925878|37926010 hsa-miR-1587 1 0 0
chr22:37925878|37926010 hsa-miR-4651 1 0 0
chr22:37925878|37926010 hsa-miR-4656 1 0 0
chr22:37925878|37926010 hsa-miR-4706 1 0 0
chr22:37925878|37926010 hsa-miR-4741 1 0 0
chr22:37925878|37926010 hsa-miR-5572 1 0 0
chr22:37925878|37926010 hsa-miR-5787 1 0 0
chr22:37925878|37926010 hsa-miR-6075 1 0 0
chr22:37925878|37926010 hsa-miR-6085 1 0 0
chr22:37925878|37926010 hsa-miR-6132 1 0 0
chr22:37925878|37926010 hsa-miR-6860 1 0 0
chr22:37925878|37926010 hsa-miR-8052 1 0 0
chr22:37925878|37926010 hsa-miR-504-3p 1 0 0
chr22:37925878|37926010 hsa-miR-6747-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4433a-3p 1 0 0
chr22:37925878|37926010 hsa-miR-4687-3p 1 0 0
chr22:37925878|37926010 hsa-miR-6089 1 0 0
chr22:37925878|37926010 hsa-miR-6757-5p 1 0 0
chr22:37925878|37926010 hsa-miR-3677-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6741-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6721-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6776-5p 1 0 0
chr22:37925878|37926010 hsa-miR-7845-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6772-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6829-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6732-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6798-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6782-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6784-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4640-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6753-5p 1 0 0
chr22:37925878|37926010 hsa-miR-3127-5p 1 0 0
chr22:37925878|37926010 hsa-miR-296-3p 1 0 0
chr22:37925878|37926010 hsa-miR-6771-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6749-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6824-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6789-5p 1 0 0
chr22:37925878|37926010 hsa-miR-3162-5p 1 0 0
chr22:37925878|37926010 hsa-miR-744-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4763-3p 1 0 0
chr22:37925878|37926010 hsa-miR-6812-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6775-5p 1 0 0
chr22:37925878|37926010 hsa-miR-5001-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6743-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6752-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6756-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6803-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6813-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6842-5p 1 0 0
chr22:37925878|37926010 hsa-miR-7110-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6722-3p 1 0 0
chr22:37925878|37926010 hsa-miR-6751-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6879-5p 1 0 0
chr22:37925878|37926010 hsa-miR-3620-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6836-5p 1 0 0
chr22:37925878|37926010 hsa-miR-10392-5p 1 0 0
chr22:37925878|37926010 hsa-miR-10396a-5p 1 0 0
chr22:37925878|37926010 hsa-miR-10396b-5p 1 0 0
chr22:37925878|37926010 hsa-miR-1909-3p 1 0 0
chr22:37925878|37926010 hsa-miR-328-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4632-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4685-5p 1 0 0
chr22:37925878|37926010 hsa-miR-4749-5p 1 0 0
chr22:37925878|37926010 hsa-miR-675-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6777-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6846-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6848-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6889-5p 1 0 0
chr22:37925878|37926010 hsa-miR-365a-5p 1 0 0
chr22:37925878|37926010 hsa-miR-365b-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6736-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6855-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6790-5p 1 0 0
chr22:37925878|37926010 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:37925878|37926010
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MATSPALGHPESTPKSLHPWYGITPTSSPKTKKR
Nucleotide Sequence CTGGCCACCAGCCCTGCCCTGGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGTACGGCATCACCCCTACCAGCAGCCCCAAGACAAAGAAGCGC
CircID chr22:37925878|37926010
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MHPAWPPALPWATRSPHPSPCTPGTASPLPAAPRQRSA
Nucleotide Sequence CTGCACCCAGCCTGGCCACCAGCCCTGCCCTGGGCCACCCGGAGTCCACACCCAAGTCCCTGCACCCCTGGTACGGCATCACCCCTACCAGCAGCCCCAAGACAAAGAAGCGCC
CircID chr22:37925878|37926010
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MGLLVGVMPYQGCRDLGVDSGWPRAGLVARLGAAGASSS
Nucleotide Sequence TTGGGGCTGCTGGTAGGGGTGATGCCGTACCAGGGGTGCAGGGACTTGGGTGTGGACTCCGGGTGGCCCAGGGCAGGGCTGGTGGCCAGGCTGGGTGCAGCTGGAGCCTCTTCCTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab