CircRNA Information

General Information
circRNA Basic Information
CircID chr22:38484234|38484506
Strand -
CircType exon
Host Gene ENSG00000100201.17;
Algorism CIRI2;
Sequence TTCTGTAAGATGGGGGGGGGACAAAAAGAGAAGTAAAGTTAAGAAGAAAGTGGAAAATTAAAAAAAAAGATGTCAAAGTTTTTACATGCATATATTTCAGCTTATGCTGAAGACCTACCTGTATGTTGCACATTGAATCATACTTTCAGAACCCCTCAGAAACCATCCCTCTCTCCCTAAAGAATTTTAAAAGGAAAACAAAACCTCGAGTATAGATCTTACAGATGAGCAAGCATTCAGGCCTTAGCCAAAGAATGCAGTGGAGCCTTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:38484234|38484506 hsa-miR-19a-5p 0 0 1
chr22:38484234|38484506 hsa-miR-19a-3p 0 0 1
chr22:38484234|38484506 hsa-miR-217-5p 0 0 1
chr22:38484234|38484506 hsa-miR-217-3p 0 0 1
chr22:38484234|38484506 hsa-miR-185-5p 0 0 1
chr22:38484234|38484506 hsa-miR-185-3p 0 0 1
chr22:38484234|38484506 hsa-miR-489-5p 0 0 1
chr22:38484234|38484506 hsa-miR-489-3p 0 0 1
chr22:38484234|38484506 hsa-miR-552-5p 0 0 1
chr22:38484234|38484506 hsa-miR-552-3p 0 0 1
chr22:38484234|38484506 hsa-miR-586 0 0 1
chr22:38484234|38484506 hsa-miR-600 0 0 1
chr22:38484234|38484506 hsa-miR-942-5p 0 0 1
chr22:38484234|38484506 hsa-miR-942-3p 0 0 1
chr22:38484234|38484506 hsa-miR-1178-5p 0 0 1
chr22:38484234|38484506 hsa-miR-1178-3p 0 0 1
chr22:38484234|38484506 hsa-miR-548l 0 0 1
chr22:38484234|38484506 hsa-miR-1284 0 0 1
chr22:38484234|38484506 hsa-miR-1321 0 0 1
chr22:38484234|38484506 hsa-miR-423-5p 0 0 1
chr22:38484234|38484506 hsa-miR-590-3p 0 0 1
chr22:38484234|38484506 hsa-miR-548d-3p 0 0 1
chr22:38484234|38484506 hsa-miR-9 0 0 1
chr22:38484234|38484506 hsa-miR-19b 0 0 1
chr22:38484234|38484506 hsa-miR-514 0 0 1
chr22:38484234|38484506 hsa-miR-133b 1 0 0
chr22:38484234|38484506 hsa-miR-608 1 0 0
chr22:38484234|38484506 hsa-miR-636 0 1 0
chr22:38484234|38484506 hsa-miR-1275 1 0 0
chr22:38484234|38484506 hsa-miR-3132 1 0 0
chr22:38484234|38484506 hsa-miR-3141 1 0 0
chr22:38484234|38484506 hsa-miR-3170 1 0 0
chr22:38484234|38484506 hsa-miR-4651 1 0 0
chr22:38484234|38484506 hsa-miR-4739 1 0 0
chr22:38484234|38484506 hsa-miR-5192 1 0 0
chr22:38484234|38484506 hsa-miR-5194 1 1 0
chr22:38484234|38484506 hsa-miR-5739 1 0 0
chr22:38484234|38484506 hsa-miR-6069 1 1 0
chr22:38484234|38484506 hsa-miR-6090 1 0 0
chr22:38484234|38484506 hsa-miR-6127 1 0 0
chr22:38484234|38484506 hsa-miR-6133 1 0 0
chr22:38484234|38484506 hsa-miR-8085 1 1 0
chr22:38484234|38484506 hsa-miR-12119 1 1 0
chr22:38484234|38484506 hsa-miR-4433b-3p 1 0 0
chr22:38484234|38484506 hsa-miR-3150a-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6894-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6881-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6728-5p 1 0 0
chr22:38484234|38484506 hsa-miR-5187-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6757-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6873-5p 1 0 0
chr22:38484234|38484506 hsa-miR-197-5p 1 0 0
chr22:38484234|38484506 hsa-miR-8069 1 1 0
chr22:38484234|38484506 hsa-miR-7845-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6793-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6798-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6760-5p 1 1 0
chr22:38484234|38484506 hsa-miR-6782-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4436b-5p 1 0 0
chr22:38484234|38484506 hsa-miR-1226-5p 1 0 0
chr22:38484234|38484506 hsa-miR-193b-5p 1 1 0
chr22:38484234|38484506 hsa-miR-5010-3p 1 0 0
chr22:38484234|38484506 hsa-miR-3679-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6809-3p 1 1 0
chr22:38484234|38484506 hsa-miR-149-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6824-5p 1 0 0
chr22:38484234|38484506 hsa-miR-3162-5p 1 1 0
chr22:38484234|38484506 hsa-miR-5010-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4646-3p 1 1 0
chr22:38484234|38484506 hsa-miR-6777-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6794-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6880-3p 1 0 0
chr22:38484234|38484506 hsa-miR-1255b-2-3p 1 0 0
chr22:38484234|38484506 hsa-miR-4433a-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4433b-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6885-3p 1 0 0
chr22:38484234|38484506 hsa-miR-133a-3p 1 0 0
chr22:38484234|38484506 hsa-miR-1207-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6812-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6870-5p 1 0 0
chr22:38484234|38484506 hsa-miR-1343-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6737-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6743-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6754-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6819-5p 1 0 0
chr22:38484234|38484506 hsa-miR-1249-5p 1 1 0
chr22:38484234|38484506 hsa-miR-6763-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6779-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6780a-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6797-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6780b-5p 0 1 0
chr22:38484234|38484506 hsa-miR-10526-3p 1 0 0
chr22:38484234|38484506 hsa-miR-4649-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4725-3p 0 1 0
chr22:38484234|38484506 hsa-miR-6729-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6738-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6794-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6846-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6883-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4769-5p 1 0 0
chr22:38484234|38484506 hsa-miR-30c-1-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6731-5p 1 1 0
chr22:38484234|38484506 hsa-miR-6758-5p 1 1 0
chr22:38484234|38484506 hsa-miR-6856-5p 1 0 0
chr22:38484234|38484506 hsa-miR-1914-3p 1 0 0
chr22:38484234|38484506 hsa-miR-4747-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6891-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6785-5p 1 0 0
chr22:38484234|38484506 hsa-miR-4667-5p 1 0 0
chr22:38484234|38484506 hsa-miR-6737-3p 1 0 0
chr22:38484234|38484506 hsa-miR-6807-3p 0 1 0
chr22:38484234|38484506 hsa-miR-6843-3p 1 0 0
chr22:38484234|38484506 hsa-miR-3059-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:38484234|38484506
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MSKFLHAYISAYAEDLPVCCTLNHTFRTPQKPSLSP
Nucleotide Sequence ATGTCAAAGTTTTTACATGCATATATTTCAGCTTATGCTGAAGACCTACCTGTATGTTGCACATTGAATCATACTTTCAGAACCCCTCAGAAACCATCCCTCTCTCCCTAA
CircID chr22:38484234|38484506
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MLHIESYFQNPSETIPLSLKNFKRKTKPRV
Nucleotide Sequence ATGTTGCACATTGAATCATACTTTCAGAACCCCTCAGAAACCATCCCTCTCTCCCTAAAGAATTTTAAAAGGAAAACAAAACCTCGAGTATAG
CircID chr22:38484234|38484506
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLICKIYTRGFVFLLKFFRERGMVSEGF
Nucleotide Sequence TTGCTCATCTGTAAGATCTATACTCGAGGTTTTGTTTTCCTTTTAAAATTCTTTAGGGAGAGAGGGATGGTTTCTGAGGGGTTCTGA
CircID chr22:38484234|38484506
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MCNIQVGLQHKLKYMHVKTLTSFFLIFHFLLNFTSLFVPPPSYR
Nucleotide Sequence ATGTGCAACATACAGGTAGGTCTTCAGCATAAGCTGAAATATATGCATGTAAAAACTTTGACATCTTTTTTTTTAATTTTCCACTTTCTTCTTAACTTTACTTCTCTTTTTGTCCCCCCCCCATCTTACAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab