CircRNA Information

General Information
circRNA Basic Information
CircID chr22:38494758|38495046
Strand -
CircType exon
Host Gene ENSG00000100201.17;
Algorism CIRI2;
Sequence TTCTTTTGGCCAGGTTGCACTCCACATCAGTGTCTGCCTATCAGGCCTGATTTGGTCAACAATTTTACGGATCTGGGGTTCAAACCCCATATCAAGCATTCTGTCAGCTTCGTCCAATACAAGGTAAGTACATCGGCGAAGATTTGTCTTTCCTGACTCCAGGAAATCTATCAGACGTCCAGGAGTGGCTATGCAGATCTCAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:38494758|38495046 hsa-miR-122-5p 0 0 1
chr22:38494758|38495046 hsa-miR-122-3p 0 0 1
chr22:38494758|38495046 hsa-miR-130a-5p 0 0 1
chr22:38494758|38495046 hsa-miR-130a-3p 0 0 1
chr22:38494758|38495046 hsa-miR-301a-5p 0 0 1
chr22:38494758|38495046 hsa-miR-301a-3p 0 0 1
chr22:38494758|38495046 hsa-miR-130b-5p 0 0 1
chr22:38494758|38495046 hsa-miR-130b-3p 0 0 1
chr22:38494758|38495046 hsa-miR-643 0 0 1
chr22:38494758|38495046 hsa-miR-653-5p 0 0 1
chr22:38494758|38495046 hsa-miR-653-3p 0 0 1
chr22:38494758|38495046 hsa-miR-454-5p 0 0 1
chr22:38494758|38495046 hsa-miR-454-3p 0 0 1
chr22:38494758|38495046 hsa-miR-190b-5p 0 0 1
chr22:38494758|38495046 hsa-miR-190b-3p 0 0 1
chr22:38494758|38495046 hsa-miR-873-5p 0 0 1
chr22:38494758|38495046 hsa-miR-873-3p 0 0 1
chr22:38494758|38495046 hsa-miR-301b-5p 0 0 1
chr22:38494758|38495046 hsa-miR-301b-3p 0 0 1
chr22:38494758|38495046 hsa-miR-940 0 0 1
chr22:38494758|38495046 hsa-miR-490-3p 0 0 1
chr22:38494758|38495046 hsa-miR-1289 0 0 1
chr22:38494758|38495046 hsa-miR-483-3p 0 0 1
chr22:38494758|38495046 hsa-miR-153 0 0 1
chr22:38494758|38495046 hsa-miR-1201 0 0 1
chr22:38494758|38495046 hsa-miR-190 0 0 1
chr22:38494758|38495046 hsa-miR-3170 0 1 0
chr22:38494758|38495046 hsa-miR-4309 0 1 0
chr22:38494758|38495046 hsa-miR-378e 1 0 0
chr22:38494758|38495046 hsa-miR-4486 1 0 0
chr22:38494758|38495046 hsa-miR-4491 0 1 0
chr22:38494758|38495046 hsa-miR-4507 1 0 0
chr22:38494758|38495046 hsa-miR-4526 0 1 0
chr22:38494758|38495046 hsa-miR-4657 0 1 0
chr22:38494758|38495046 hsa-miR-11399 0 1 0
chr22:38494758|38495046 hsa-miR-153-3p 0 1 0
chr22:38494758|38495046 hsa-miR-6742-5p 1 1 0
chr22:38494758|38495046 hsa-miR-6796-5p 0 1 0
chr22:38494758|38495046 hsa-miR-223-5p 0 1 0
chr22:38494758|38495046 hsa-miR-193b-5p 0 1 0
chr22:38494758|38495046 hsa-miR-4529-3p 1 0 0
chr22:38494758|38495046 hsa-miR-1910-3p 0 1 0
chr22:38494758|38495046 hsa-miR-6511a-5p 0 1 0
chr22:38494758|38495046 hsa-miR-3198 0 1 0
chr22:38494758|38495046 hsa-miR-6855-5p 0 1 0
chr22:38494758|38495046 hsa-miR-6733-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:38494758|38495046
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MPIRPDLVNNFTDLGFKPHIKHSVSFVQYKVSTSAKICLS
Nucleotide Sequence CTGCCTATCAGGCCTGATTTGGTCAACAATTTTACGGATCTGGGGTTCAAACCCCATATCAAGCATTCTGTCAGCTTCGTCCAATACAAGGTAAGTACATCGGCGAAGATTTGTCTTTCCTGA
CircID chr22:38494758|38495046
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MIWSTILRIWGSNPISSILSASSNTR
Nucleotide Sequence CTGATTTGGTCAACAATTTTACGGATCTGGGGTTCAAACCCCATATCAAGCATTCTGTCAGCTTCGTCCAATACAAGGTAA
CircID chr22:38494758|38495046
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MYWTKLTECLIWGLNPRSVKLLTKSGLIGRH
Nucleotide Sequence TTGTATTGGACGAAGCTGACAGAATGCTTGATATGGGGTTTGAACCCCAGATCCGTAAAATTGTTGACCAAATCAGGCCTGATAGGCAGACACTGA
CircID chr22:38494758|38495046
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MHSHSWTSDRFPGVRKDKSSPMYLPCIGRS
Nucleotide Sequence CTGCATAGCCACTCCTGGACGTCTGATAGATTTCCTGGAGTCAGGAAAGACAAATCTTCGCCGATGTACTTACCTTGTATTGGACGAAGCTGA
CircID chr22:38494758|38495046
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE
Nucleotide Sequence CTGATAGATTTCCTGGAGTCAGGAAAGACAAATCTTCGCCGATGTACTTACCTTGTATTGGACGAAGCTGACAGAATGCTTGATATGGGGTTTGAACCCCAGATCCGTAAAATTGTTGACCAAATCAGGCCTGATAGGCAGACACTGATGTGGAGTGCAACCTGGCCAAAAGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab