CircRNA Information

General Information
circRNA Basic Information
CircID chr22:38686052|38686236
Strand +
CircType exon
Host Gene ENSG00000100221.9;
Algorism CIRI2;
Sequence AAGGCCGTTTTTTTAATGCTGAGTAACAGGCCACCAAGCGGCTACTGCGTTATATCTTCTCAGCAACTGGCCGCAGTCTCTTCTGCACCATTTTCTACACCAGACCTGCTTGGCACCACAGGGAGCTCTTTTCCTGCCCTGCACAATGACATTCCAACCACCACCAGCCAGACATTACAGCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:38686052|38686236 hsa-miR-149-5p 0 0 1
chr22:38686052|38686236 hsa-miR-149-3p 0 0 1
chr22:38686052|38686236 hsa-miR-206 0 0 1
chr22:38686052|38686236 hsa-miR-410-5p 0 0 1
chr22:38686052|38686236 hsa-miR-410-3p 0 0 1
chr22:38686052|38686236 hsa-miR-522-5p 0 0 1
chr22:38686052|38686236 hsa-miR-522-3p 0 0 1
chr22:38686052|38686236 hsa-miR-510-5p 0 0 1
chr22:38686052|38686236 hsa-miR-510-3p 0 0 1
chr22:38686052|38686236 hsa-miR-613 0 0 1
chr22:38686052|38686236 hsa-miR-616-5p 0 0 1
chr22:38686052|38686236 hsa-miR-616-3p 0 0 1
chr22:38686052|38686236 hsa-miR-647 0 0 1
chr22:38686052|38686236 hsa-miR-298 0 0 1
chr22:38686052|38686236 hsa-miR-1231 0 0 1
chr22:38686052|38686236 hsa-miR-1253 0 0 1
chr22:38686052|38686236 hsa-miR-1276 0 1 1
chr22:38686052|38686236 hsa-miR-512-5p 0 0 1
chr22:38686052|38686236 hsa-miR-339-5p 0 0 1
chr22:38686052|38686236 hsa-miR-654-3p 0 0 1
chr22:38686052|38686236 hsa-miR-876-3p 0 0 1
chr22:38686052|38686236 hsa-miR-628-5p 0 0 1
chr22:38686052|38686236 hsa-miR-1274a 0 0 1
chr22:38686052|38686236 hsa-miR-323-5p 0 0 1
chr22:38686052|38686236 hsa-miR-1274b 0 0 1
chr22:38686052|38686236 hsa-miR-138 0 0 1
chr22:38686052|38686236 hsa-miR-1300 0 0 1
chr22:38686052|38686236 hsa-miR-1 0 0 1
chr22:38686052|38686236 hsa-miR-608 1 0 0
chr22:38686052|38686236 hsa-miR-612 1 0 0
chr22:38686052|38686236 hsa-miR-648 1 0 0
chr22:38686052|38686236 hsa-miR-3147 1 0 0
chr22:38686052|38686236 hsa-miR-4289 1 1 0
chr22:38686052|38686236 hsa-miR-3621 1 0 0
chr22:38686052|38686236 hsa-miR-3652 1 0 0
chr22:38686052|38686236 hsa-miR-3665 1 0 0
chr22:38686052|38686236 hsa-miR-3911 1 0 0
chr22:38686052|38686236 hsa-miR-4505 1 0 0
chr22:38686052|38686236 hsa-miR-1587 1 0 0
chr22:38686052|38686236 hsa-miR-4647 1 0 0
chr22:38686052|38686236 hsa-miR-4657 1 0 0
chr22:38686052|38686236 hsa-miR-4660 1 1 0
chr22:38686052|38686236 hsa-miR-4736 1 0 0
chr22:38686052|38686236 hsa-miR-5787 1 0 0
chr22:38686052|38686236 hsa-miR-6086 1 0 0
chr22:38686052|38686236 hsa-miR-6132 1 1 0
chr22:38686052|38686236 hsa-miR-6134 1 0 0
chr22:38686052|38686236 hsa-miR-6165 1 0 0
chr22:38686052|38686236 hsa-miR-6860 1 0 0
chr22:38686052|38686236 hsa-miR-7974 1 0 0
chr22:38686052|38686236 hsa-miR-9900 1 0 0
chr22:38686052|38686236 hsa-miR-11399 1 1 0
chr22:38686052|38686236 hsa-miR-138-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6861-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4687-3p 1 0 0
chr22:38686052|38686236 hsa-miR-6510-5p 0 1 0
chr22:38686052|38686236 hsa-miR-6833-5p 1 1 0
chr22:38686052|38686236 hsa-miR-6880-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4722-5p 1 1 0
chr22:38686052|38686236 hsa-miR-3064-5p 1 1 0
chr22:38686052|38686236 hsa-miR-6727-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6842-3p 1 0 0
chr22:38686052|38686236 hsa-miR-8069 1 0 0
chr22:38686052|38686236 hsa-miR-6772-5p 1 0 0
chr22:38686052|38686236 hsa-miR-5006-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6735-3p 0 1 0
chr22:38686052|38686236 hsa-miR-1229-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4640-5p 1 0 0
chr22:38686052|38686236 hsa-miR-1228-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4690-5p 1 0 0
chr22:38686052|38686236 hsa-miR-146b-3p 0 1 0
chr22:38686052|38686236 hsa-miR-7112-5p 1 0 0
chr22:38686052|38686236 hsa-miR-873-3p 0 1 0
chr22:38686052|38686236 hsa-miR-4999-5p 1 0 0
chr22:38686052|38686236 hsa-miR-5197-3p 0 1 0
chr22:38686052|38686236 hsa-miR-493-3p 1 0 0
chr22:38686052|38686236 hsa-miR-224-3p 0 1 0
chr22:38686052|38686236 hsa-miR-5007-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4639-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4763-3p 1 0 0
chr22:38686052|38686236 hsa-miR-6769b-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6893-5p 1 1 0
chr22:38686052|38686236 hsa-miR-6775-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6743-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6754-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6803-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6851-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6722-3p 1 0 0
chr22:38686052|38686236 hsa-miR-6751-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6808-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6879-5p 0 1 0
chr22:38686052|38686236 hsa-miR-3620-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6836-5p 1 0 0
chr22:38686052|38686236 hsa-miR-1909-3p 1 0 0
chr22:38686052|38686236 hsa-miR-328-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4632-5p 1 0 0
chr22:38686052|38686236 hsa-miR-4436b-3p 0 1 0
chr22:38686052|38686236 hsa-miR-3085-5p 1 0 0
chr22:38686052|38686236 hsa-miR-6856-5p 1 0 0
chr22:38686052|38686236 hsa-miR-7843-5p 1 1 0
chr22:38686052|38686236 hsa-miR-6791-5p 1 0 0
chr22:38686052|38686236 hsa-miR-10400-3p 1 0 0
chr22:38686052|38686236 hsa-miR-6504-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:38686052|38686236
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MLSNRPPSGYCVISSQQLAAVSSAPFSTPDLLGTTGSSFPALHNDIPTTTSQTLQP
Nucleotide Sequence ATGCTGAGTAACAGGCCACCAAGCGGCTACTGCGTTATATCTTCTCAGCAACTGGCCGCAGTCTCTTCTGCACCATTTTCTACACCAGACCTGCTTGGCACCACAGGGAGCTCTTTTCCTGCCCTGCACAATGACATTCCAACCACCACCAGCCAGACATTACAGCCA
CircID chr22:38686052|38686236
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MHHFLHQTCLAPQGALFLPCTMTFQPPPARHYSQ
Nucleotide Sequence CTGCACCATTTTCTACACCAGACCTGCTTGGCACCACAGGGAGCTCTTTTCCTGCCCTGCACAATGACATTCCAACCACCACCAGCCAGACATTACAGCCAA
CircID chr22:38686052|38686236
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MRYIFSATGRSLFCTIFYTRPAWHHRELFSCPAQ
Nucleotide Sequence CTGCGTTATATCTTCTCAGCAACTGGCCGCAGTCTCTTCTGCACCATTTTCTACACCAGACCTGCTTGGCACCACAGGGAGCTCTTTTCCTGCCCTGCACAATGA
CircID chr22:38686052|38686236
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MVVVGMSLCRAGKELPVVPSRSGVENGAEETAASC
Nucleotide Sequence CTGGTGGTGGTTGGAATGTCATTGTGCAGGGCAGGAAAAGAGCTCCCTGTGGTGCCAAGCAGGTCTGGTGTAGAAAATGGTGCAGAAGAGACTGCGGCCAGTTGCTGA
CircID chr22:38686052|38686236
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence LAVMSGWWWLECHCAGQEKSSLWCQAGLV
Nucleotide Sequence TTGGCTGTAATGTCTGGCTGGTGGTGGTTGGAATGTCATTGTGCAGGGCAGGAAAAGAGCTCCCTGTGGTGCCAAGCAGGTCTGGTGTAG
CircID chr22:38686052|38686236
ORF Type ORF6
Protein Length 52
Nucleotide Length 159
Protein Sequence MAGGGWNVIVQGRKRAPCGAKQVWCRKWCRRDCGQLLRRYNAVAAWWPVTQH
Nucleotide Sequence CTGGCTGGTGGTGGTTGGAATGTCATTGTGCAGGGCAGGAAAAGAGCTCCCTGTGGTGCCAAGCAGGTCTGGTGTAGAAAATGGTGCAGAAGAGACTGCGGCCAGTTGCTGAGAAGATATAACGCAGTAGCCGCTTGGTGGCCTGTTACTCAGCATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab