CircRNA Information

General Information
circRNA Basic Information
CircID chr22:38739722|38739859
Strand -
CircType exon
Host Gene ENSG00000100242.14;
Algorism CIRI2;
Sequence CTCCTCTGTCACTCCAATCACACCTTCTTTCTGCAGCGTCAGGCTCAGGGAGGCCGCGGCTTCCCTGGCCGACTTGCCCTGCATCTCTGCCACATGGGTGAGGATCTTGCTCTCCAGCTCTCGCAGCTGAGCTTGCAT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:38739722|38739859 hsa-miR-122-5p 0 0 1
chr22:38739722|38739859 hsa-miR-122-3p 0 0 1
chr22:38739722|38739859 hsa-miR-185-5p 0 0 1
chr22:38739722|38739859 hsa-miR-185-3p 0 0 1
chr22:38739722|38739859 hsa-miR-298 1 0 1
chr22:38739722|38739859 hsa-miR-671-5p 0 0 1
chr22:38739722|38739859 hsa-miR-509-3p 0 0 1
chr22:38739722|38739859 hsa-miR-1207-3p 0 0 1
chr22:38739722|38739859 hsa-miR-125a-5p 0 0 1
chr22:38739722|38739859 hsa-miR-542-3p 0 0 1
chr22:38739722|38739859 hsa-miR-125b 0 0 1
chr22:38739722|38739859 hsa-miR-608 1 0 0
chr22:38739722|38739859 hsa-miR-3154 1 0 0
chr22:38739722|38739859 hsa-miR-3155a 0 1 0
chr22:38739722|38739859 hsa-miR-3911 1 0 0
chr22:38739722|38739859 hsa-miR-4498 0 1 0
chr22:38739722|38739859 hsa-miR-5090 0 1 0
chr22:38739722|38739859 hsa-miR-6127 1 0 0
chr22:38739722|38739859 hsa-miR-3194-3p 1 0 0
chr22:38739722|38739859 hsa-miR-6765-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6854-5p 0 1 0
chr22:38739722|38739859 hsa-miR-6804-5p 1 0 0
chr22:38739722|38739859 hsa-miR-1236-5p 0 1 0
chr22:38739722|38739859 hsa-miR-3934-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6730-5p 1 0 0
chr22:38739722|38739859 hsa-miR-1301-3p 1 0 0
chr22:38739722|38739859 hsa-miR-197-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6787-3p 1 1 0
chr22:38739722|38739859 hsa-miR-7108-5p 1 0 0
chr22:38739722|38739859 hsa-miR-7161-3p 1 0 0
chr22:38739722|38739859 hsa-miR-7113-3p 0 1 0
chr22:38739722|38739859 hsa-miR-6516-5p 1 0 0
chr22:38739722|38739859 hsa-miR-3158-5p 1 1 0
chr22:38739722|38739859 hsa-miR-4638-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6778-3p 0 1 0
chr22:38739722|38739859 hsa-miR-7113-5p 0 1 0
chr22:38739722|38739859 hsa-miR-6761-5p 1 0 0
chr22:38739722|38739859 hsa-miR-670-5p 0 1 0
chr22:38739722|38739859 hsa-miR-1207-5p 1 1 0
chr22:38739722|38739859 hsa-miR-4763-3p 1 0 0
chr22:38739722|38739859 hsa-miR-6865-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6893-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6775-5p 0 1 0
chr22:38739722|38739859 hsa-miR-1343-5p 1 0 0
chr22:38739722|38739859 hsa-miR-5001-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6726-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6511a-5p 1 0 0
chr22:38739722|38739859 hsa-miR-6511b-5p 1 0 0
chr22:38739722|38739859 hsa-miR-1199-5p 0 1 0
chr22:38739722|38739859 hsa-miR-3689d 1 0 0
chr22:38739722|38739859 hsa-miR-6751-3p 0 1 0
chr22:38739722|38739859 hsa-miR-4756-5p 0 1 0
chr22:38739722|38739859 hsa-miR-125b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:38739722|38739859
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MQRQAQGGRGFPGRLALHLCHMGEDLALQLSQLSLH
Nucleotide Sequence CTGCAGCGTCAGGCTCAGGGAGGCCGCGGCTTCCCTGGCCGACTTGCCCTGCATCTCTGCCACATGGGTGAGGATCTTGCTCTCCAGCTCTCGCAGCTGAGCTTGCAT
CircID chr22:38739722|38739859
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MSLQSHLLSAASGSGRPRLPWPTCPASLPHG
Nucleotide Sequence CTGTCACTCCAATCACACCTTCTTTCTGCAGCGTCAGGCTCAGGGAGGCCGCGGCTTCCCTGGCCGACTTGCCCTGCATCTCTGCCACATGGGTGA
CircID chr22:38739722|38739859
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MQAQLRELESKILTHVAEMQGKSAREAAASLSLTLQKEGVIGVTEE
Nucleotide Sequence ATGCAAGCTCAGCTGCGAGAGCTGGAGAGCAAGATCCTCACCCATGTGGCAGAGATGCAGGGCAAGTCGGCCAGGGAAGCCGCGGCCTCCCTGAGCCTGACGCTGCAGAAAGAAGGTGTGATTGGAGTGACAGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab