CircRNA Information

General Information
circRNA Basic Information
CircID chr22:40120397|40120573
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACAGCATTAATCACACACTTTTACTTCCTAAGCTTTTCACTAACCTCATTTCTAATTACTCTCAAAGCACCCTGTATTCTGCATTCACGCAGGCAAATCTTTCCATTCTCAGCACACAACATGCTAATCTCTCTCTATGTATATCCTAGTCCACACCCTACTGGAAAACCCTTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:40120397|40120573 hsa-miR-155-5p 0 0 1
chr22:40120397|40120573 hsa-miR-155-3p 0 0 1
chr22:40120397|40120573 hsa-miR-376c-5p 0 0 1
chr22:40120397|40120573 hsa-miR-376c-3p 0 0 1
chr22:40120397|40120573 hsa-miR-580-5p 0 0 1
chr22:40120397|40120573 hsa-miR-580-3p 0 0 1
chr22:40120397|40120573 hsa-miR-595 0 0 1
chr22:40120397|40120573 hsa-miR-298 0 0 1
chr22:40120397|40120573 hsa-miR-921 0 0 1
chr22:40120397|40120573 hsa-miR-1257 0 0 1
chr22:40120397|40120573 hsa-miR-548n 0 0 1
chr22:40120397|40120573 hsa-miR-145-5p 0 0 1
chr22:40120397|40120573 hsa-miR-770-5p 0 0 1
chr22:40120397|40120573 hsa-miR-147 0 0 1
chr22:40120397|40120573 hsa-miR-601 1 0 0
chr22:40120397|40120573 hsa-miR-1205 1 0 0
chr22:40120397|40120573 hsa-miR-1294 1 0 0
chr22:40120397|40120573 hsa-miR-1268a 1 0 0
chr22:40120397|40120573 hsa-miR-3138 1 0 0
chr22:40120397|40120573 hsa-miR-3193 0 1 0
chr22:40120397|40120573 hsa-miR-4322 1 0 0
chr22:40120397|40120573 hsa-miR-3911 1 0 0
chr22:40120397|40120573 hsa-miR-1268b 1 0 0
chr22:40120397|40120573 hsa-miR-4458 1 0 0
chr22:40120397|40120573 hsa-miR-4489 1 0 0
chr22:40120397|40120573 hsa-miR-4491 1 0 0
chr22:40120397|40120573 hsa-miR-4510 1 0 0
chr22:40120397|40120573 hsa-miR-378i 1 0 0
chr22:40120397|40120573 hsa-miR-3978 1 0 0
chr22:40120397|40120573 hsa-miR-4656 1 0 0
chr22:40120397|40120573 hsa-miR-4752 1 0 0
chr22:40120397|40120573 hsa-miR-5093 1 1 0
chr22:40120397|40120573 hsa-miR-5194 1 0 0
chr22:40120397|40120573 hsa-miR-5739 1 0 0
chr22:40120397|40120573 hsa-miR-6086 1 0 0
chr22:40120397|40120573 hsa-miR-6127 1 0 0
chr22:40120397|40120573 hsa-miR-6129 1 0 0
chr22:40120397|40120573 hsa-miR-12119 1 0 0
chr22:40120397|40120573 hsa-miR-6734-5p 1 0 0
chr22:40120397|40120573 hsa-miR-504-3p 1 0 0
chr22:40120397|40120573 hsa-miR-6747-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6894-5p 1 0 0
chr22:40120397|40120573 hsa-miR-8071 1 0 0
chr22:40120397|40120573 hsa-miR-6833-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6741-5p 1 0 0
chr22:40120397|40120573 hsa-miR-5589-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6776-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6742-5p 1 0 0
chr22:40120397|40120573 hsa-miR-3605-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6772-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6796-5p 1 0 0
chr22:40120397|40120573 hsa-miR-193b-5p 1 0 0
chr22:40120397|40120573 hsa-miR-149-3p 1 0 0
chr22:40120397|40120573 hsa-miR-3162-5p 1 1 0
chr22:40120397|40120573 hsa-miR-4776-5p 1 0 0
chr22:40120397|40120573 hsa-miR-664b-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6818-5p 0 1 0
chr22:40120397|40120573 hsa-miR-6503-3p 1 1 0
chr22:40120397|40120573 hsa-miR-3688-3p 0 1 0
chr22:40120397|40120573 hsa-miR-6769b-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6812-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6752-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6756-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6819-5p 1 0 0
chr22:40120397|40120573 hsa-miR-7110-5p 1 0 0
chr22:40120397|40120573 hsa-miR-10401-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6763-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6883-5p 1 0 0
chr22:40120397|40120573 hsa-miR-939-5p 1 0 0
chr22:40120397|40120573 hsa-miR-4769-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6758-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6856-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6855-5p 1 0 0
chr22:40120397|40120573 hsa-miR-3679-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6790-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6849-5p 1 0 0
chr22:40120397|40120573 hsa-miR-342-5p 1 0 0
chr22:40120397|40120573 hsa-miR-619-5p 1 0 0
chr22:40120397|40120573 hsa-miR-6506-5p 1 0 0
chr22:40120397|40120573 hsa-miR-548az-5p 1 0 0
chr22:40120397|40120573 hsa-miR-655-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr22:40120397|40120573
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MYSAFTQANLSILSTQHANLSLCIS
Nucleotide Sequence CTGTATTCTGCATTCACGCAGGCAAATCTTTCCATTCTCAGCACACAACATGCTAATCTCTCTCTATGTATATCCTAG

CircID chr22:40120397|40120573
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MHSRRQIFPFSAHNMLISLYVYPSPHPTGKPF
Nucleotide Sequence CTGCATTCACGCAGGCAAATCTTTCCATTCTCAGCACACAACATGCTAATCTCTCTCTATGTATATCCTAGTCCACACCCTACTGGAAAACCCTTC

CircID chr22:40120397|40120573
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MLCAENGKICLRECRIQGALRVIRNEVSEKLRK
Nucleotide Sequence ATGTTGTGTGCTGAGAATGGAAAGATTTGCCTGCGTGAATGCAGAATACAGGGTGCTTTGAGAGTAATTAGAAATGAGGTTAGTGAAAAGCTTAGGAAGTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites