CircRNA Information

General Information
circRNA Basic Information
CircID chr22:40334504|40334778
Strand -
CircType exon
Host Gene ENSG00000100354.19;
Algorism CIRI2;
Sequence CTCATCCCTGTTCTGCGTAACCAAAAAACAGACAACAAAAGCAACCTGAGGAGAGGTTTCTGGACTATTTTATCTGTCTCCATTTAGATGGAGATATAAATGCTGCTTTGGGTTCCATAATCCTAGGGGGCTATGTTTACATAGTAAAATACATCCTACCAAATCAGGAAACAGTGAATAATGGGAGTCACTTCACAGAGACGCAGGAGGACCTGGGGGGCGTAGCAGAGGAGGATAGGTAGAGAAGTACCATTTTAATTATTTGTGACTTGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:40334504|40334778 hsa-miR-15a-5p 0 0 1
chr22:40334504|40334778 hsa-miR-15a-3p 0 0 1
chr22:40334504|40334778 hsa-miR-30a-5p 0 0 1
chr22:40334504|40334778 hsa-miR-30a-3p 0 0 1
chr22:40334504|40334778 hsa-miR-107 0 1 1
chr22:40334504|40334778 hsa-miR-198 0 0 1
chr22:40334504|40334778 hsa-miR-30d-5p 0 0 1
chr22:40334504|40334778 hsa-miR-30d-3p 0 0 1
chr22:40334504|40334778 hsa-miR-224-5p 0 0 1
chr22:40334504|40334778 hsa-miR-224-3p 0 0 1
chr22:40334504|40334778 hsa-miR-15b-5p 0 0 1
chr22:40334504|40334778 hsa-miR-15b-3p 0 0 1
chr22:40334504|40334778 hsa-miR-30b-5p 0 0 1
chr22:40334504|40334778 hsa-miR-30b-3p 0 0 1
chr22:40334504|40334778 hsa-miR-136-5p 0 0 1
chr22:40334504|40334778 hsa-miR-136-3p 0 0 1
chr22:40334504|40334778 hsa-miR-195-5p 0 0 1
chr22:40334504|40334778 hsa-miR-195-3p 0 0 1
chr22:40334504|40334778 hsa-miR-30e-5p 0 0 1
chr22:40334504|40334778 hsa-miR-30e-3p 0 0 1
chr22:40334504|40334778 hsa-miR-380-5p 0 0 1
chr22:40334504|40334778 hsa-miR-380-3p 0 0 1
chr22:40334504|40334778 hsa-miR-424-5p 0 0 1
chr22:40334504|40334778 hsa-miR-424-3p 0 0 1
chr22:40334504|40334778 hsa-miR-452-5p 0 0 1
chr22:40334504|40334778 hsa-miR-452-3p 0 0 1
chr22:40334504|40334778 hsa-miR-497-5p 0 0 1
chr22:40334504|40334778 hsa-miR-497-3p 0 0 1
chr22:40334504|40334778 hsa-miR-522-5p 0 0 1
chr22:40334504|40334778 hsa-miR-522-3p 0 0 1
chr22:40334504|40334778 hsa-miR-573 0 0 1
chr22:40334504|40334778 hsa-miR-577 0 0 1
chr22:40334504|40334778 hsa-miR-593-5p 0 0 1
chr22:40334504|40334778 hsa-miR-593-3p 0 0 1
chr22:40334504|40334778 hsa-miR-632 0 0 1
chr22:40334504|40334778 hsa-miR-659-5p 0 0 1
chr22:40334504|40334778 hsa-miR-659-3p 0 0 1
chr22:40334504|40334778 hsa-miR-942-5p 0 0 1
chr22:40334504|40334778 hsa-miR-942-3p 0 0 1
chr22:40334504|40334778 hsa-miR-1231 0 0 1
chr22:40334504|40334778 hsa-miR-1200 0 0 1
chr22:40334504|40334778 hsa-miR-1208 0 0 1
chr22:40334504|40334778 hsa-miR-1255a 0 0 1
chr22:40334504|40334778 hsa-miR-1265 0 0 1
chr22:40334504|40334778 hsa-miR-129-5p 0 0 1
chr22:40334504|40334778 hsa-miR-330-3p 0 0 1
chr22:40334504|40334778 hsa-miR-361-3p 1 1 1
chr22:40334504|40334778 hsa-miR-409-5p 0 0 1
chr22:40334504|40334778 hsa-miR-103 0 0 1
chr22:40334504|40334778 hsa-miR-16 0 0 1
chr22:40334504|40334778 hsa-miR-1255b 0 0 1
chr22:40334504|40334778 hsa-miR-30c 0 0 1
chr22:40334504|40334778 hsa-miR-620 0 1 0
chr22:40334504|40334778 hsa-miR-640 1 0 0
chr22:40334504|40334778 hsa-miR-1913 1 0 0
chr22:40334504|40334778 hsa-miR-718 1 0 0
chr22:40334504|40334778 hsa-miR-4313 1 0 0
chr22:40334504|40334778 hsa-miR-4326 1 0 0
chr22:40334504|40334778 hsa-miR-3943 0 1 0
chr22:40334504|40334778 hsa-miR-4495 0 1 0
chr22:40334504|40334778 hsa-miR-5193 1 1 0
chr22:40334504|40334778 hsa-miR-6749-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6840-3p 1 0 0
chr22:40334504|40334778 hsa-miR-4726-3p 0 1 0
chr22:40334504|40334778 hsa-miR-296-5p 1 0 0
chr22:40334504|40334778 hsa-miR-6840-5p 1 0 0
chr22:40334504|40334778 hsa-miR-6845-3p 1 0 0
chr22:40334504|40334778 hsa-miR-877-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6868-3p 0 1 0
chr22:40334504|40334778 hsa-miR-6728-3p 1 1 0
chr22:40334504|40334778 hsa-miR-4436b-5p 1 0 0
chr22:40334504|40334778 hsa-miR-5001-3p 1 0 0
chr22:40334504|40334778 hsa-miR-7111-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6780a-3p 0 1 0
chr22:40334504|40334778 hsa-miR-1266-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6786-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6769a-3p 1 0 0
chr22:40334504|40334778 hsa-miR-103b 0 1 0
chr22:40334504|40334778 hsa-miR-339-5p 1 0 0
chr22:40334504|40334778 hsa-miR-1237-3p 1 0 0
chr22:40334504|40334778 hsa-miR-660-3p 0 1 0
chr22:40334504|40334778 hsa-miR-5000-5p 0 1 0
chr22:40334504|40334778 hsa-miR-597-3p 0 1 0
chr22:40334504|40334778 hsa-miR-6859-3p 1 0 0
chr22:40334504|40334778 hsa-miR-1292-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6883-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6748-3p 0 1 0
chr22:40334504|40334778 hsa-miR-7152-5p 1 0 0
chr22:40334504|40334778 hsa-miR-6798-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6800-3p 1 1 0
chr22:40334504|40334778 hsa-miR-6890-3p 1 0 0
chr22:40334504|40334778 hsa-miR-3682-5p 0 1 0
chr22:40334504|40334778 hsa-miR-3127-3p 1 0 0
chr22:40334504|40334778 hsa-miR-320a-5p 1 0 0
chr22:40334504|40334778 hsa-miR-6754-3p 1 0 0
chr22:40334504|40334778 hsa-miR-892c-3p 0 1 0
chr22:40334504|40334778 hsa-miR-1266-5p 1 0 0
chr22:40334504|40334778 hsa-miR-2682-3p 1 0 0
chr22:40334504|40334778 hsa-miR-4722-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6805-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6810-3p 1 0 0
chr22:40334504|40334778 hsa-miR-6829-3p 1 0 0
chr22:40334504|40334778 hsa-miR-3059-5p 1 1 0
chr22:40334504|40334778 hsa-miR-10394-5p 1 0 0
chr22:40334504|40334778 hsa-miR-6827-3p 1 0 0
chr22:40334504|40334778 hsa-miR-410-5p 1 0 0
chr22:40334504|40334778 hsa-miR-9902 0 1 0
chr22:40334504|40334778 hsa-miR-4777-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:40334504|40334778
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MSPFRWRYKCCFGFHNPRGLCLHSKIHPTKSGNSE
Nucleotide Sequence CTGTCTCCATTTAGATGGAGATATAAATGCTGCTTTGGGTTCCATAATCCTAGGGGGCTATGTTTACATAGTAAAATACATCCTACCAAATCAGGAAACAGTGAATAA
CircID chr22:40334504|40334778
ORF Type ORF2
Protein Length 60
Nucleotide Length 183
Protein Sequence MDYFICLHLDGDINAALGSIILGGYVYIVKYILPNQETVNNGSHFTETQEDLGGVAEEDR
Nucleotide Sequence CTGGACTATTTTATCTGTCTCCATTTAGATGGAGATATAAATGCTGCTTTGGGTTCCATAATCCTAGGGGGCTATGTTTACATAGTAAAATACATCCTACCAAATCAGGAAACAGTGAATAATGGGAGTCACTTCACAGAGACGCAGGAGGACCTGGGGGGCGTAGCAGAGGAGGATAGGTAG
CircID chr22:40334504|40334778
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence METDKIVQKPLLRLLLLSVFWLRRTGM
Nucleotide Sequence ATGGAGACAGATAAAATAGTCCAGAAACCTCTCCTCAGGTTGCTTTTGTTGTCTGTTTTTTGGTTACGCAGAACAGGGATG
CircID chr22:40334504|40334778
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MFPDLVGCILLCKHSPLGLWNPKQHLYLHLNGDR
Nucleotide Sequence CTGTTTCCTGATTTGGTAGGATGTATTTTACTATGTAAACATAGCCCCCTAGGATTATGGAACCCAAAGCAGCATTTATATCTCCATCTAAATGGAGACAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab