CircRNA Information

General Information
circRNA Basic Information
CircID chr22:40407449|40407843
Strand +
CircType exon
Host Gene ENSG00000100359.19;
Algorism CIRI2;
Sequence CTCGCAGGCCGTTGAGCTCCCCCACCCAGCAGTGCTCGTCCTTCTGAGACACGATCTGCACAGGAGGAAAAACAGCAGGAACCAAAGCTGGGTGCCCTGGGCCAGCGCCTCCTGCACCCCCGATATGACTCCTCAGCAACTAGGCCAGGCCAAGACCCCTACATCTTCACAAGAGAAGCTCTTGGCAGGGAAAGGGGTTGGGGTGGGGCTTGGTGGAGGGAGTCTGGGGAACCCGCCACAGCCTGAGGACCTGGTAGTCCAGCGCCCCCACGCACTGTGATGATGTCGTTCTTGCGGAAGCCCAGCTCGTCGTCGTCGTGCCGCTCAAAGTCCAGCAGGGCCTTGGCTCGGCGCCGGTGGCTGCGTGAGCACGCCACGTAGTTCTCGTGGTCCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:40407449|40407843 hsa-miR-27a-5p 0 0 1
chr22:40407449|40407843 hsa-miR-27a-3p 0 0 1
chr22:40407449|40407843 hsa-miR-95-5p 0 0 1
chr22:40407449|40407843 hsa-miR-95-3p 0 0 1
chr22:40407449|40407843 hsa-miR-187-5p 0 0 1
chr22:40407449|40407843 hsa-miR-187-3p 0 0 1
chr22:40407449|40407843 hsa-miR-27b-5p 0 0 1
chr22:40407449|40407843 hsa-miR-27b-3p 0 0 1
chr22:40407449|40407843 hsa-miR-146a-5p 0 0 1
chr22:40407449|40407843 hsa-miR-146a-3p 0 0 1
chr22:40407449|40407843 hsa-miR-370-5p 0 0 1
chr22:40407449|40407843 hsa-miR-370-3p 0 0 1
chr22:40407449|40407843 hsa-miR-335-5p 0 0 1
chr22:40407449|40407843 hsa-miR-335-3p 0 0 1
chr22:40407449|40407843 hsa-miR-422a 0 1 1
chr22:40407449|40407843 hsa-miR-484 0 0 1
chr22:40407449|40407843 hsa-miR-581 0 0 1
chr22:40407449|40407843 hsa-miR-625-5p 0 0 1
chr22:40407449|40407843 hsa-miR-625-3p 0 0 1
chr22:40407449|40407843 hsa-miR-659-5p 0 0 1
chr22:40407449|40407843 hsa-miR-659-3p 0 0 1
chr22:40407449|40407843 hsa-miR-920 0 0 1
chr22:40407449|40407843 hsa-miR-939-5p 0 0 1
chr22:40407449|40407843 hsa-miR-939-3p 0 0 1
chr22:40407449|40407843 hsa-miR-942-5p 0 0 1
chr22:40407449|40407843 hsa-miR-942-3p 0 0 1
chr22:40407449|40407843 hsa-miR-1178-5p 0 0 1
chr22:40407449|40407843 hsa-miR-1178-3p 0 0 1
chr22:40407449|40407843 hsa-miR-1234-3p 0 0 1
chr22:40407449|40407843 hsa-miR-1238-5p 0 0 1
chr22:40407449|40407843 hsa-miR-1238-3p 0 0 1
chr22:40407449|40407843 hsa-miR-1286 0 0 1
chr22:40407449|40407843 hsa-miR-1287-5p 0 0 1
chr22:40407449|40407843 hsa-miR-1287-3p 0 0 1
chr22:40407449|40407843 hsa-miR-1291 0 1 1
chr22:40407449|40407843 hsa-miR-1293 0 0 1
chr22:40407449|40407843 hsa-miR-1275 0 0 1
chr22:40407449|40407843 hsa-miR-1234 0 0 1
chr22:40407449|40407843 hsa-miR-615-3p 0 1 1
chr22:40407449|40407843 hsa-miR-193a-5p 0 1 1
chr22:40407449|40407843 hsa-miR-628-5p 0 0 1
chr22:40407449|40407843 hsa-miR-342-5p 1 0 1
chr22:40407449|40407843 hsa-miR-146b-5p 0 0 1
chr22:40407449|40407843 hsa-miR-1274a 0 0 1
chr22:40407449|40407843 hsa-miR-128 0 0 1
chr22:40407449|40407843 hsa-miR-9 0 0 1
chr22:40407449|40407843 hsa-miR-378 0 0 1
chr22:40407449|40407843 hsa-miR-663 0 0 1
chr22:40407449|40407843 hsa-miR-637 0 1 0
chr22:40407449|40407843 hsa-miR-663a 1 0 0
chr22:40407449|40407843 hsa-miR-378b 0 1 0
chr22:40407449|40407843 hsa-miR-3142 0 1 0
chr22:40407449|40407843 hsa-miR-3175 1 0 0
chr22:40407449|40407843 hsa-miR-3176 0 1 0
chr22:40407449|40407843 hsa-miR-3196 1 0 0
chr22:40407449|40407843 hsa-miR-3197 0 1 0
chr22:40407449|40407843 hsa-miR-378c 0 1 0
chr22:40407449|40407843 hsa-miR-4300 0 1 0
chr22:40407449|40407843 hsa-miR-4323 0 1 0
chr22:40407449|40407843 hsa-miR-378e 0 1 0
chr22:40407449|40407843 hsa-miR-378f 0 1 0
chr22:40407449|40407843 hsa-miR-378g 0 1 0
chr22:40407449|40407843 hsa-miR-4447 0 1 0
chr22:40407449|40407843 hsa-miR-378h 0 1 0
chr22:40407449|40407843 hsa-miR-4469 0 1 0
chr22:40407449|40407843 hsa-miR-378i 0 1 0
chr22:40407449|40407843 hsa-miR-4651 1 0 0
chr22:40407449|40407843 hsa-miR-4689 1 1 0
chr22:40407449|40407843 hsa-miR-5572 1 0 0
chr22:40407449|40407843 hsa-miR-5698 1 1 0
chr22:40407449|40407843 hsa-miR-5787 1 0 0
chr22:40407449|40407843 hsa-miR-7974 0 1 0
chr22:40407449|40407843 hsa-miR-8055 0 1 0
chr22:40407449|40407843 hsa-miR-8058 0 1 0
chr22:40407449|40407843 hsa-miR-8089 1 0 0
chr22:40407449|40407843 hsa-miR-9900 0 1 0
chr22:40407449|40407843 hsa-miR-9-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4433b-3p 1 0 0
chr22:40407449|40407843 hsa-miR-4726-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6861-5p 1 0 0
chr22:40407449|40407843 hsa-miR-3692-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4695-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4722-5p 1 1 0
chr22:40407449|40407843 hsa-miR-6796-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6732-5p 1 0 0
chr22:40407449|40407843 hsa-miR-486-3p 1 0 0
chr22:40407449|40407843 hsa-miR-6821-5p 0 1 0
chr22:40407449|40407843 hsa-miR-3934-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6763-3p 1 0 0
chr22:40407449|40407843 hsa-miR-4640-5p 1 0 0
chr22:40407449|40407843 hsa-miR-4691-3p 0 1 0
chr22:40407449|40407843 hsa-miR-4787-5p 1 1 0
chr22:40407449|40407843 hsa-miR-4446-5p 0 1 0
chr22:40407449|40407843 hsa-miR-6789-5p 1 0 0
chr22:40407449|40407843 hsa-miR-660-3p 0 1 0
chr22:40407449|40407843 hsa-miR-4758-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6793-3p 0 1 0
chr22:40407449|40407843 hsa-miR-3074-5p 0 1 0
chr22:40407449|40407843 hsa-miR-2355-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4433a-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4763-3p 1 0 0
chr22:40407449|40407843 hsa-miR-6787-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6870-5p 1 0 0
chr22:40407449|40407843 hsa-miR-1343-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6726-5p 1 1 0
chr22:40407449|40407843 hsa-miR-6737-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6752-5p 1 1 0
chr22:40407449|40407843 hsa-miR-6756-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6803-5p 1 1 0
chr22:40407449|40407843 hsa-miR-7107-5p 1 0 0
chr22:40407449|40407843 hsa-miR-7110-5p 0 1 0
chr22:40407449|40407843 hsa-miR-6751-5p 1 0 0
chr22:40407449|40407843 hsa-miR-7111-5p 1 0 0
chr22:40407449|40407843 hsa-miR-1915-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6836-5p 1 0 0
chr22:40407449|40407843 hsa-miR-10396a-5p 1 0 0
chr22:40407449|40407843 hsa-miR-10396b-5p 1 0 0
chr22:40407449|40407843 hsa-miR-328-5p 1 1 0
chr22:40407449|40407843 hsa-miR-4685-5p 1 0 0
chr22:40407449|40407843 hsa-miR-4745-5p 1 0 0
chr22:40407449|40407843 hsa-miR-675-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6777-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6848-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6858-5p 1 1 0
chr22:40407449|40407843 hsa-miR-6887-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6889-5p 1 0 0
chr22:40407449|40407843 hsa-miR-4697-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4723-5p 1 0 0
chr22:40407449|40407843 hsa-miR-6885-5p 1 0 0
chr22:40407449|40407843 hsa-miR-365a-5p 0 1 0
chr22:40407449|40407843 hsa-miR-4665-5p 1 1 0
chr22:40407449|40407843 hsa-miR-378a-3p 0 1 0
chr22:40407449|40407843 hsa-miR-4472 0 1 0
chr22:40407449|40407843 hsa-miR-6766-5p 0 1 0
chr22:40407449|40407843 hsa-miR-6762-5p 1 0 0
chr22:40407449|40407843 hsa-miR-4722-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6893-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6784-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6792-3p 0 1 0
chr22:40407449|40407843 hsa-miR-6862-3p 0 1 0
chr22:40407449|40407843 hsa-miR-378d 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:40407449|40407843
ORF Type ORF1
Protein Length 52
Nucleotide Length 159
Protein Sequence MGALGQRLLHPRYDSSATRPGQDPYIFTREALGRERGWGGAWWRESGEPATA
Nucleotide Sequence CTGGGTGCCCTGGGCCAGCGCCTCCTGCACCCCCGATATGACTCCTCAGCAACTAGGCCAGGCCAAGACCCCTACATCTTCACAAGAGAAGCTCTTGGCAGGGAAAGGGGTTGGGGTGGGGCTTGGTGGAGGGAGTCTGGGGAACCCGCCACAGCCTGA
CircID chr22:40407449|40407843
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MMSFLRKPSSSSSCRSKSSRALARRRWLREHAT
Nucleotide Sequence ATGATGTCGTTCTTGCGGAAGCCCAGCTCGTCGTCGTCGTGCCGCTCAAAGTCCAGCAGGGCCTTGGCTCGGCGCCGGTGGCTGCGTGAGCACGCCACGTAG
CircID chr22:40407449|40407843
ORF Type ORF3
Protein Length 78
Nucleotide Length 237
Protein Sequence MRHDLHRRKNSRNQSWVPWASASCTPDMTPQQLGQAKTPTSSQEKLLAGKGVGVGLGGGSLGNPPQPEDLVVQRPHAL
Nucleotide Sequence CTGAGACACGATCTGCACAGGAGGAAAAACAGCAGGAACCAAAGCTGGGTGCCCTGGGCCAGCGCCTCCTGCACCCCCGATATGACTCCTCAGCAACTAGGCCAGGCCAAGACCCCTACATCTTCACAAGAGAAGCTCTTGGCAGGGAAAGGGGTTGGGGTGGGGCTTGGTGGAGGGAGTCTGGGGAACCCGCCACAGCCTGAGGACCTGGTAGTCCAGCGCCCCCACGCACTGTGA
CircID chr22:40407449|40407843
ORF Type ORF4
Protein Length 59
Nucleotide Length 180
Protein Sequence MLDFERHDDDELGFRKNDIITVRGGAGLPGPQAVAGSPDSLHQAPPQPLSLPRASLVKM
Nucleotide Sequence CTGCTGGACTTTGAGCGGCACGACGACGACGAGCTGGGCTTCCGCAAGAACGACATCATCACAGTGCGTGGGGGCGCTGGACTACCAGGTCCTCAGGCTGTGGCGGGTTCCCCAGACTCCCTCCACCAAGCCCCACCCCAACCCCTTTCCCTGCCAAGAGCTTCTCTTGTGAAGATGTAG
CircID chr22:40407449|40407843
ORF Type ORF5
Protein Length 53
Nucleotide Length 162
Protein Sequence MSGTTTTSWASARTTSSQCVGALDYQVLRLWRVPQTPSTKPHPNPFPCQELLL
Nucleotide Sequence TTGAGCGGCACGACGACGACGAGCTGGGCTTCCGCAAGAACGACATCATCACAGTGCGTGGGGGCGCTGGACTACCAGGTCCTCAGGCTGTGGCGGGTTCCCCAGACTCCCTCCACCAAGCCCCACCCCAACCCCTTTCCCTGCCAAGAGCTTCTCTTGTGA
CircID chr22:40407449|40407843
ORF Type ORF6
Protein Length 46
Nucleotide Length 138
Protein Sequence MLRSHIGGAGGAGPGHPALVPAVFPPVQIVSQKDEHCWVGELNGLR
Nucleotide Sequence TTGCTGAGGAGTCATATCGGGGGTGCAGGAGGCGCTGGCCCAGGGCACCCAGCTTTGGTTCCTGCTGTTTTTCCTCCTGTGCAGATCGTGTCTCAGAAGGACGAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGA
CircID chr22:40407449|40407843
ORF Type ORF7
Protein Length 35
Nucleotide Length 105
Protein Sequence MAQGTQLWFLLFFLLCRSCLRRTSTAGWGSSTACE
Nucleotide Sequence CTGGCCCAGGGCACCCAGCTTTGGTTCCTGCTGTTTTTCCTCCTGTGCAGATCGTGTCTCAGAAGGACGAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab