CircRNA Information

General Information
circRNA Basic Information
CircID chr22:40410764|40411062
Strand -
CircType exon
Host Gene ENSG00000196588.13;
Algorism CIRI2;
Sequence CCATCTCCTGTCCGCCCCCCCCCAAAAATATATATGTATGTCGATATATAATATAGAGGTATATACACCTGTACATAAAATTGTTGCCACCAACCACTAAATGGTTACACTACACCAAGACACTAAAATGGCAGGGAGCCCTGGGATCCTGGGGTTGGCAGACACAGGGAATAGGGGGTAGAGGCCCAGGCTAATTTCTCCCTTCACAGCAAAGCAGGGAGAGAAAGGAAGGAGATTCACCCCTTAACCTGTCTCAGCCCTGGGTCAGAAGAGAAGCCTCCCGCCTGGCCAGGCTTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:40410764|40411062 hsa-miR-346 0 0 1
chr22:40410764|40411062 hsa-miR-431-5p 0 0 1
chr22:40410764|40411062 hsa-miR-431-3p 0 0 1
chr22:40410764|40411062 hsa-miR-539-5p 0 0 1
chr22:40410764|40411062 hsa-miR-539-3p 0 0 1
chr22:40410764|40411062 hsa-miR-552-5p 0 0 1
chr22:40410764|40411062 hsa-miR-552-3p 0 0 1
chr22:40410764|40411062 hsa-miR-596 0 0 1
chr22:40410764|40411062 hsa-miR-632 0 0 1
chr22:40410764|40411062 hsa-miR-661 1 1 1
chr22:40410764|40411062 hsa-miR-656-5p 0 0 1
chr22:40410764|40411062 hsa-miR-656-3p 0 0 1
chr22:40410764|40411062 hsa-miR-942-5p 0 0 1
chr22:40410764|40411062 hsa-miR-942-3p 0 0 1
chr22:40410764|40411062 hsa-miR-1236-5p 0 0 1
chr22:40410764|40411062 hsa-miR-1236-3p 0 0 1
chr22:40410764|40411062 hsa-miR-1275 1 0 1
chr22:40410764|40411062 hsa-miR-140-5p 0 0 1
chr22:40410764|40411062 hsa-miR-339-5p 0 0 1
chr22:40410764|40411062 hsa-miR-875-5p 0 0 1
chr22:40410764|40411062 hsa-miR-142-3p 0 1 1
chr22:40410764|40411062 hsa-miR-590-3p 0 0 1
chr22:40410764|40411062 hsa-miR-1274a 0 0 1
chr22:40410764|40411062 hsa-miR-1274b 0 0 1
chr22:40410764|40411062 hsa-miR-711 1 0 0
chr22:40410764|40411062 hsa-miR-3188 0 1 0
chr22:40410764|40411062 hsa-miR-3196 0 1 0
chr22:40410764|40411062 hsa-miR-3611 0 1 0
chr22:40410764|40411062 hsa-miR-3936 0 1 0
chr22:40410764|40411062 hsa-miR-3938 0 1 0
chr22:40410764|40411062 hsa-miR-4449 1 0 0
chr22:40410764|40411062 hsa-miR-4488 1 1 0
chr22:40410764|40411062 hsa-miR-3972 1 1 0
chr22:40410764|40411062 hsa-miR-4651 1 0 0
chr22:40410764|40411062 hsa-miR-4656 1 1 0
chr22:40410764|40411062 hsa-miR-5572 1 0 0
chr22:40410764|40411062 hsa-miR-6734-5p 0 1 0
chr22:40410764|40411062 hsa-miR-4726-3p 1 0 0
chr22:40410764|40411062 hsa-miR-6861-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6799-5p 1 0 0
chr22:40410764|40411062 hsa-miR-766-5p 0 1 0
chr22:40410764|40411062 hsa-miR-6089 1 0 0
chr22:40410764|40411062 hsa-miR-432-5p 1 0 0
chr22:40410764|40411062 hsa-miR-1915-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6760-5p 0 1 0
chr22:40410764|40411062 hsa-miR-3194-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6815-3p 0 1 0
chr22:40410764|40411062 hsa-miR-939-3p 1 1 0
chr22:40410764|40411062 hsa-miR-7109-5p 1 1 0
chr22:40410764|40411062 hsa-miR-6784-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6753-5p 1 0 0
chr22:40410764|40411062 hsa-miR-7113-3p 0 1 0
chr22:40410764|40411062 hsa-miR-1228-5p 1 0 0
chr22:40410764|40411062 hsa-miR-3667-3p 1 0 0
chr22:40410764|40411062 hsa-miR-6823-5p 0 1 0
chr22:40410764|40411062 hsa-miR-6809-3p 0 1 0
chr22:40410764|40411062 hsa-miR-4446-5p 1 0 0
chr22:40410764|40411062 hsa-miR-937-5p 1 0 0
chr22:40410764|40411062 hsa-miR-4640-3p 1 1 0
chr22:40410764|40411062 hsa-miR-6864-5p 0 1 0
chr22:40410764|40411062 hsa-miR-4661-3p 0 1 0
chr22:40410764|40411062 hsa-miR-6867-3p 0 1 0
chr22:40410764|40411062 hsa-miR-5189-3p 0 1 0
chr22:40410764|40411062 hsa-miR-4746-5p 1 0 0
chr22:40410764|40411062 hsa-miR-502-5p 0 1 0
chr22:40410764|40411062 hsa-miR-4524a-3p 0 1 0
chr22:40410764|40411062 hsa-miR-6798-3p 0 1 0
chr22:40410764|40411062 hsa-miR-670-5p 1 0 0
chr22:40410764|40411062 hsa-miR-4727-5p 0 1 0
chr22:40410764|40411062 hsa-miR-4524b-3p 0 1 0
chr22:40410764|40411062 hsa-miR-1233-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6778-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6787-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6816-5p 1 1 0
chr22:40410764|40411062 hsa-miR-6893-5p 0 1 0
chr22:40410764|40411062 hsa-miR-6737-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6756-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6803-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6819-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6842-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6751-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6779-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6780a-5p 1 0 0
chr22:40410764|40411062 hsa-miR-7111-5p 1 0 0
chr22:40410764|40411062 hsa-miR-1915-3p 1 1 0
chr22:40410764|40411062 hsa-miR-4728-5p 1 0 0
chr22:40410764|40411062 hsa-miR-1237-5p 1 1 0
chr22:40410764|40411062 hsa-miR-328-5p 1 1 0
chr22:40410764|40411062 hsa-miR-4685-5p 1 1 0
chr22:40410764|40411062 hsa-miR-6795-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6848-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6887-5p 1 0 0
chr22:40410764|40411062 hsa-miR-6885-5p 1 0 0
chr22:40410764|40411062 hsa-miR-1266-5p 1 1 0
chr22:40410764|40411062 hsa-miR-4665-5p 1 0 0
chr22:40410764|40411062 hsa-miR-4472 1 0 0
chr22:40410764|40411062 hsa-miR-10398-5p 0 1 0
chr22:40410764|40411062 hsa-miR-6810-3p 1 0 0
chr22:40410764|40411062 hsa-miR-6744-3p 0 1 0
chr22:40410764|40411062 hsa-miR-6783-3p 0 1 0
chr22:40410764|40411062 hsa-miR-6817-5p 1 1 0
chr22:40410764|40411062 hsa-miR-6764-5p 1 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:40410764|40411062
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MSAPPQKYICMSIYNIEVYTPVHKIVATNH
Nucleotide Sequence CTGTCCGCCCCCCCCCAAAAATATATATGTATGTCGATATATAATATAGAGGTATATACACCTGTACATAAAATTGTTGCCACCAACCACTAA
CircID chr22:40410764|40411062
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MVTLHQDTKMAGSPGILGLADTGNRG
Nucleotide Sequence ATGGTTACACTACACCAAGACACTAAAATGGCAGGGAGCCCTGGGATCCTGGGGTTGGCAGACACAGGGAATAGGGGGTAG
CircID chr22:40410764|40411062
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MYIKLLPPTTKWLHYTKTLKWQGALGSWGWQTQGIGGRGPG
Nucleotide Sequence CTGTACATAAAATTGTTGCCACCAACCACTAAATGGTTACACTACACCAAGACACTAAAATGGCAGGGAGCCCTGGGATCCTGGGGTTGGCAGACACAGGGAATAGGGGGTAGAGGCCCAGGCTAA
CircID chr22:40410764|40411062
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MYRCIYLYIIYRHTYIFLGGGGQEM
Nucleotide Sequence ATGTACAGGTGTATATACCTCTATATTATATATCGACATACATATATATTTTTGGGGGGGGGCGGACAGGAGATG
CircID chr22:40410764|40411062
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLYPLFPVSANPRIPGLPAILVSWCSVTI
Nucleotide Sequence CTGGGCCTCTACCCCCTATTCCCTGTGTCTGCCAACCCCAGGATCCCAGGGCTCCCTGCCATTTTAGTGTCTTGGTGTAGTGTAACCATTTAG
CircID chr22:40410764|40411062
ORF Type ORF6
Protein Length 31
Nucleotide Length 93
Protein Sequence MVATILCTGVYTSILYIDIHIYFWGGADRRW
Nucleotide Sequence TTGGTGGCAACAATTTTATGTACAGGTGTATATACCTCTATATTATATATCGACATACATATATATTTTTGGGGGGGGGCGGACAGGAGATGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab