CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41178726|41178913
Strand -
CircType exon
Host Gene ENSG00000100393.9;
Algorism CIRI2;
Sequence CACGTTTCCCCACAGACAAGTTCCCCACATCCTGGACTGGTAGCTGCCCAGGCCAACCCCATGGAACAAGGGCATTTTGCCAGCCCGGACCAGAATTCAATGCTTTCTCAGCTTGCTAGCAATCCAGGCATGGCAAACCTCCATGGTGCAAGCGCCACGGACCTGGGACTCAGCACCGATAACTCAGA
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41178726|41178913 hsa-miR-539-5p 0 0 1
chr22:41178726|41178913 hsa-miR-539-3p 0 0 1
chr22:41178726|41178913 hsa-miR-612 0 1 1
chr22:41178726|41178913 hsa-miR-621 0 0 1
chr22:41178726|41178913 hsa-miR-632 0 0 1
chr22:41178726|41178913 hsa-miR-661 0 1 1
chr22:41178726|41178913 hsa-miR-665 0 0 1
chr22:41178726|41178913 hsa-miR-938 0 0 1
chr22:41178726|41178913 hsa-miR-1231 0 0 1
chr22:41178726|41178913 hsa-miR-1250-5p 0 0 1
chr22:41178726|41178913 hsa-miR-1250-3p 0 0 1
chr22:41178726|41178913 hsa-miR-1265 0 1 1
chr22:41178726|41178913 hsa-miR-491-5p 1 1 1
chr22:41178726|41178913 hsa-miR-767-5p 0 1 1
chr22:41178726|41178913 hsa-miR-299-3p 0 0 1
chr22:41178726|41178913 hsa-miR-455-3p 0 0 1
chr22:41178726|41178913 hsa-miR-1285 0 0 1
chr22:41178726|41178913 hsa-miR-1254 0 0 1
chr22:41178726|41178913 hsa-miR-365 0 0 1
chr22:41178726|41178913 hsa-miR-762 1 0 0
chr22:41178726|41178913 hsa-miR-920 1 0 0
chr22:41178726|41178913 hsa-miR-1538 1 0 0
chr22:41178726|41178913 hsa-miR-2110 0 1 0
chr22:41178726|41178913 hsa-miR-4322 1 0 0
chr22:41178726|41178913 hsa-miR-4327 0 1 0
chr22:41178726|41178913 hsa-miR-4271 1 0 0
chr22:41178726|41178913 hsa-miR-4466 1 0 0
chr22:41178726|41178913 hsa-miR-4498 1 1 0
chr22:41178726|41178913 hsa-miR-4507 1 1 0
chr22:41178726|41178913 hsa-miR-1587 1 0 0
chr22:41178726|41178913 hsa-miR-4538 1 0 0
chr22:41178726|41178913 hsa-miR-4682 0 1 0
chr22:41178726|41178913 hsa-miR-5698 1 0 0
chr22:41178726|41178913 hsa-miR-1843 0 1 0
chr22:41178726|41178913 hsa-miR-92a-2-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6734-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6825-5p 1 0 0
chr22:41178726|41178913 hsa-miR-7847-3p 1 0 0
chr22:41178726|41178913 hsa-miR-7160-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6890-5p 0 1 0
chr22:41178726|41178913 hsa-miR-6759-5p 1 0 0
chr22:41178726|41178913 hsa-miR-101-5p 0 1 0
chr22:41178726|41178913 hsa-miR-6742-5p 1 0 0
chr22:41178726|41178913 hsa-miR-1292-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6796-5p 0 1 0
chr22:41178726|41178913 hsa-miR-486-3p 0 1 0
chr22:41178726|41178913 hsa-miR-6850-5p 1 0 0
chr22:41178726|41178913 hsa-miR-939-3p 0 1 0
chr22:41178726|41178913 hsa-miR-3944-3p 1 1 0
chr22:41178726|41178913 hsa-miR-4764-5p 0 1 0
chr22:41178726|41178913 hsa-miR-4690-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6823-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6834-5p 1 0 0
chr22:41178726|41178913 hsa-miR-4446-3p 1 0 0
chr22:41178726|41178913 hsa-miR-7152-3p 0 1 0
chr22:41178726|41178913 hsa-miR-4776-3p 0 1 0
chr22:41178726|41178913 hsa-miR-4802-5p 0 1 0
chr22:41178726|41178913 hsa-miR-1343-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6726-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6756-5p 1 0 0
chr22:41178726|41178913 hsa-miR-10401-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6763-5p 1 0 0
chr22:41178726|41178913 hsa-miR-3620-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6780b-5p 1 0 0
chr22:41178726|41178913 hsa-miR-4632-5p 1 0 0
chr22:41178726|41178913 hsa-miR-4725-3p 1 0 0
chr22:41178726|41178913 hsa-miR-4745-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6794-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6795-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6887-5p 1 0 0
chr22:41178726|41178913 hsa-miR-3187-5p 0 1 0
chr22:41178726|41178913 hsa-miR-939-5p 1 1 0
chr22:41178726|41178913 hsa-miR-365a-5p 1 0 0
chr22:41178726|41178913 hsa-miR-365b-5p 1 0 0
chr22:41178726|41178913 hsa-miR-4665-5p 1 0 0
chr22:41178726|41178913 hsa-miR-6855-5p 0 1 0
chr22:41178726|41178913 hsa-miR-4472 1 0 0
chr22:41178726|41178913 hsa-miR-5591-5p 1 0 0
chr22:41178726|41178913 hsa-miR-342-5p 1 0 0
chr22:41178726|41178913 hsa-miR-7153-3p 0 1 0
chr22:41178726|41178913 hsa-miR-4659b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:41178726|41178913
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MVAAQANPMEQGHFASPDQNSMLSQLASNPGMANLHGASATDLGLSTDNS
Nucleotide Sequence CTGGTAGCTGCCCAGGCCAACCCCATGGAACAAGGGCATTTTGCCAGCCCGGACCAGAATTCAATGCTTTCTCAGCTTGCTAGCAATCCAGGCATGGCAAACCTCCATGGTGCAAGCGCCACGGACCTGGGACTCAGCACCGATAACTCA
CircID chr22:41178726|41178913
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MPRPTPWNKGILPARTRIQCFLSLLAIQAWQTSMVQAPRTWDSAPITQ
Nucleotide Sequence CTGCCCAGGCCAACCCCATGGAACAAGGGCATTTTGCCAGCCCGGACCAGAATTCAATGCTTTCTCAGCTTGCTAGCAATCCAGGCATGGCAAACCTCCATGGTGCAAGCGCCACGGACCTGGGACTCAGCACCGATAACTCAG
CircID chr22:41178726|41178913
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MAKCPCSMGLAWAATSPGCGELVCGET
Nucleotide Sequence CTGGCAAAATGCCCTTGTTCCATGGGGTTGGCCTGGGCAGCTACCAGTCCAGGATGTGGGGAACTTGTCTGTGGGGAAACG
CircID chr22:41178726|41178913
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MNSGPGWQNALVPWGWPGQLPVQDVGNLSVGKR
Nucleotide Sequence TTGAATTCTGGTCCGGGCTGGCAAAATGCCCTTGTTCCATGGGGTTGGCCTGGGCAGCTACCAGTCCAGGATGTGGGGAACTTGTCTGTGGGGAAACGT
CircID chr22:41178726|41178913
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MVRAGKMPLFHGVGLGSYQSRMWGTCLWGNV
Nucleotide Sequence CTGGTCCGGGCTGGCAAAATGCCCTTGTTCCATGGGGTTGGCCTGGGCAGCTACCAGTCCAGGATGTGGGGAACTTGTCTGTGGGGAAACGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab