CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41256030|41256260
Strand -
CircType exon
Host Gene ENSG00000100401.18;
Algorism CIRI2;
Sequence GCCAGCACCTTGGCCATGTTGAAGCCCTCCAGCACCTCCTGAAGCTGTTCACAGCCTTCTTCTCCCAGGGTGTTGCCTGCTCAAGGGGAGGGAAGAGCAGTCAGCCGGGGTGCCAGGGCCAGCCTAGCAGACCTGTGCAGAGGCCTCCCCCATCCGACTACCATTCAGGTCCAGCTTCTCCAGCTCAGCTTTGTCTGCCATGGCCTCAGCAACAGCCAGGGCAGCATCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41256030|41256260 hsa-miR-18a-5p 0 0 1
chr22:41256030|41256260 hsa-miR-18a-3p 0 0 1
chr22:41256030|41256260 hsa-miR-320a-5p 0 0 1
chr22:41256030|41256260 hsa-miR-320a-3p 0 0 1
chr22:41256030|41256260 hsa-miR-328-5p 0 0 1
chr22:41256030|41256260 hsa-miR-328-3p 0 0 1
chr22:41256030|41256260 hsa-miR-18b-5p 0 0 1
chr22:41256030|41256260 hsa-miR-18b-3p 0 0 1
chr22:41256030|41256260 hsa-miR-492 0 0 1
chr22:41256030|41256260 hsa-miR-558 0 0 1
chr22:41256030|41256260 hsa-miR-625-5p 0 0 1
chr22:41256030|41256260 hsa-miR-625-3p 0 0 1
chr22:41256030|41256260 hsa-miR-645 0 1 1
chr22:41256030|41256260 hsa-miR-421 0 0 1
chr22:41256030|41256260 hsa-miR-874-5p 0 0 1
chr22:41256030|41256260 hsa-miR-874-3p 0 0 1
chr22:41256030|41256260 hsa-miR-1236-5p 0 0 1
chr22:41256030|41256260 hsa-miR-1236-3p 0 0 1
chr22:41256030|41256260 hsa-miR-1287-5p 0 0 1
chr22:41256030|41256260 hsa-miR-1287-3p 0 0 1
chr22:41256030|41256260 hsa-miR-1291 0 0 1
chr22:41256030|41256260 hsa-miR-1253 0 0 1
chr22:41256030|41256260 hsa-miR-1275 1 1 1
chr22:41256030|41256260 hsa-miR-146b-3p 0 0 1
chr22:41256030|41256260 hsa-miR-628-5p 0 0 1
chr22:41256030|41256260 hsa-miR-320b 1 1 1
chr22:41256030|41256260 hsa-miR-320c 1 1 1
chr22:41256030|41256260 hsa-miR-320d 0 1 1
chr22:41256030|41256260 hsa-miR-642 0 0 1
chr22:41256030|41256260 hsa-miR-762 1 0 0
chr22:41256030|41256260 hsa-miR-765 1 0 0
chr22:41256030|41256260 hsa-miR-1263 0 1 0
chr22:41256030|41256260 hsa-miR-1538 1 0 0
chr22:41256030|41256260 hsa-miR-2861 1 0 0
chr22:41256030|41256260 hsa-miR-3125 1 1 0
chr22:41256030|41256260 hsa-miR-3166 0 1 0
chr22:41256030|41256260 hsa-miR-3175 0 1 0
chr22:41256030|41256260 hsa-miR-3185 0 1 0
chr22:41256030|41256260 hsa-miR-320e 0 1 0
chr22:41256030|41256260 hsa-miR-4429 1 1 0
chr22:41256030|41256260 hsa-miR-378h 1 0 0
chr22:41256030|41256260 hsa-miR-3135b 0 1 0
chr22:41256030|41256260 hsa-miR-4478 1 0 0
chr22:41256030|41256260 hsa-miR-4487 0 1 0
chr22:41256030|41256260 hsa-miR-4516 0 1 0
chr22:41256030|41256260 hsa-miR-4535 0 1 0
chr22:41256030|41256260 hsa-miR-1587 1 0 0
chr22:41256030|41256260 hsa-miR-4539 1 0 0
chr22:41256030|41256260 hsa-miR-4651 1 0 0
chr22:41256030|41256260 hsa-miR-4663 0 1 0
chr22:41256030|41256260 hsa-miR-4686 0 1 0
chr22:41256030|41256260 hsa-miR-4721 0 1 0
chr22:41256030|41256260 hsa-miR-4739 1 0 0
chr22:41256030|41256260 hsa-miR-4780 0 1 0
chr22:41256030|41256260 hsa-miR-6125 1 0 0
chr22:41256030|41256260 hsa-miR-6132 1 0 0
chr22:41256030|41256260 hsa-miR-7974 0 1 0
chr22:41256030|41256260 hsa-miR-8085 1 1 0
chr22:41256030|41256260 hsa-miR-12115 1 0 0
chr22:41256030|41256260 hsa-miR-6825-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4687-3p 1 1 0
chr22:41256030|41256260 hsa-miR-6799-5p 1 1 0
chr22:41256030|41256260 hsa-miR-139-3p 1 0 0
chr22:41256030|41256260 hsa-miR-7851-3p 1 1 0
chr22:41256030|41256260 hsa-miR-6089 1 0 0
chr22:41256030|41256260 hsa-miR-3192-5p 0 1 0
chr22:41256030|41256260 hsa-miR-6746-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4722-5p 1 0 0
chr22:41256030|41256260 hsa-miR-3064-5p 0 1 0
chr22:41256030|41256260 hsa-miR-7160-5p 0 1 0
chr22:41256030|41256260 hsa-miR-6741-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6760-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4793-3p 1 0 0
chr22:41256030|41256260 hsa-miR-6821-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1226-5p 1 1 0
chr22:41256030|41256260 hsa-miR-30c-2-3p 0 1 0
chr22:41256030|41256260 hsa-miR-6771-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4690-5p 1 1 0
chr22:41256030|41256260 hsa-miR-485-5p 0 1 0
chr22:41256030|41256260 hsa-miR-6749-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4743-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6824-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6878-5p 0 1 0
chr22:41256030|41256260 hsa-miR-7112-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1250-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6767-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4790-3p 0 1 0
chr22:41256030|41256260 hsa-miR-1207-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1233-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1273h-5p 1 1 0
chr22:41256030|41256260 hsa-miR-6787-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1343-5p 1 0 0
chr22:41256030|41256260 hsa-miR-5001-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6737-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6752-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6756-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6803-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6842-5p 1 0 0
chr22:41256030|41256260 hsa-miR-1249-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6722-3p 1 0 0
chr22:41256030|41256260 hsa-miR-6751-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6774-5p 1 1 0
chr22:41256030|41256260 hsa-miR-6779-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6780a-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6788-5p 0 1 0
chr22:41256030|41256260 hsa-miR-7111-5p 1 1 0
chr22:41256030|41256260 hsa-miR-3620-5p 1 1 0
chr22:41256030|41256260 hsa-miR-10392-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6729-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6848-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6858-5p 1 0 0
chr22:41256030|41256260 hsa-miR-939-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4758-5p 1 1 0
chr22:41256030|41256260 hsa-miR-6511b-5p 1 0 0
chr22:41256030|41256260 hsa-miR-30c-1-3p 0 1 0
chr22:41256030|41256260 hsa-miR-6731-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6856-5p 1 0 0
chr22:41256030|41256260 hsa-miR-4665-5p 1 1 0
chr22:41256030|41256260 hsa-miR-6877-3p 1 0 0
chr22:41256030|41256260 hsa-miR-4646-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6791-5p 1 1 0
chr22:41256030|41256260 hsa-miR-6753-3p 1 0 0
chr22:41256030|41256260 hsa-miR-4757-5p 0 1 0
chr22:41256030|41256260 hsa-miR-6775-3p 0 1 0
chr22:41256030|41256260 hsa-miR-3085-3p 0 1 0
chr22:41256030|41256260 hsa-miR-4756-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6876-3p 0 1 0
chr22:41256030|41256260 hsa-miR-3619-5p 1 0 0
chr22:41256030|41256260 hsa-miR-6504-5p 0 1 0
chr22:41256030|41256260 hsa-miR-302b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:41256030|41256260
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MPAQGEGRAVSRGARASLADLCRGLPHPTTIQVQLLQLSFVCHGLSNSQGSIP
Nucleotide Sequence TTGCCTGCTCAAGGGGAGGGAAGAGCAGTCAGCCGGGGTGCCAGGGCCAGCCTAGCAGACCTGTGCAGAGGCCTCCCCCATCCGACTACCATTCAGGTCCAGCTTCTCCAGCTCAGCTTTGTCTGCCATGGCCTCAGCAACAGCCAGGGCAGCATCCCT
CircID chr22:41256030|41256260
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MKLFTAFFSQGVACSRGGKSSQPGCQGQPSRPVQRPPPSDYHSGPASPAQLCLPWPQQQPGQHP
Nucleotide Sequence CTGAAGCTGTTCACAGCCTTCTTCTCCCAGGGTGTTGCCTGCTCAAGGGGAGGGAAGAGCAGTCAGCCGGGGTGCCAGGGCCAGCCTAGCAGACCTGTGCAGAGGCCTCCCCCATCCGACTACCATTCAGGTCCAGCTTCTCCAGCTCAGCTTTGTCTGCCATGGCCTCAGCAACAGCCAGGGCAGCATCCC
CircID chr22:41256030|41256260
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MAVAEAMADKAELEKLDLNGSRMGEASAQVC
Nucleotide Sequence CTGGCTGTTGCTGAGGCCATGGCAGACAAAGCTGAGCTGGAGAAGCTGGACCTGAATGGTAGTCGGATGGGGGAGGCCTCTGCACAGGTCTGCTAG
CircID chr22:41256030|41256260
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MVVGWGRPLHRSARLALAPRLTALPSP
Nucleotide Sequence ATGGTAGTCGGATGGGGGAGGCCTCTGCACAGGTCTGCTAGGCTGGCCCTGGCACCCCGGCTGACTGCTCTTCCCTCCCCTTGA
CircID chr22:41256030|41256260
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MLFPPLEQATPWEKKAVNSFRRCWRASTWPRCW
Nucleotide Sequence CTGCTCTTCCCTCCCCTTGAGCAGGCAACACCCTGGGAGAAGAAGGCTGTGAACAGCTTCAGGAGGTGCTGGAGGGCTTCAACATGGCCAAGGTGCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab