CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41347887|41347994
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTGAGCTGGAAGCAGAGAGGCAAGACCACAGACCCTGGGATTCCCTTCCTCACTCCTCTGACCCAGGGCAGGGCTTGCAGGGACCCAGCTGTCCTTCCCCAGCTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41347887|41347994 hsa-miR-431-5p 0 0 1
chr22:41347887|41347994 hsa-miR-431-3p 0 0 1
chr22:41347887|41347994 hsa-miR-874-5p 0 0 1
chr22:41347887|41347994 hsa-miR-874-3p 0 0 1
chr22:41347887|41347994 hsa-miR-1182 0 0 1
chr22:41347887|41347994 hsa-miR-146b-3p 0 0 1
chr22:41347887|41347994 hsa-miR-1207-3p 0 0 1
chr22:41347887|41347994 hsa-miR-516a-3p 0 0 1
chr22:41347887|41347994 hsa-miR-637 1 0 0
chr22:41347887|41347994 hsa-miR-638 1 0 0
chr22:41347887|41347994 hsa-miR-762 1 0 0
chr22:41347887|41347994 hsa-miR-765 0 1 0
chr22:41347887|41347994 hsa-miR-760 1 0 0
chr22:41347887|41347994 hsa-miR-921 0 1 0
chr22:41347887|41347994 hsa-miR-1231 1 0 0
chr22:41347887|41347994 hsa-miR-1205 0 1 0
chr22:41347887|41347994 hsa-miR-2110 0 1 0
chr22:41347887|41347994 hsa-miR-4271 0 1 0
chr22:41347887|41347994 hsa-miR-4476 0 1 0
chr22:41347887|41347994 hsa-miR-4505 1 0 0
chr22:41347887|41347994 hsa-miR-5194 0 1 0
chr22:41347887|41347994 hsa-miR-6069 1 0 0
chr22:41347887|41347994 hsa-miR-8080 0 1 0
chr22:41347887|41347994 hsa-miR-8089 1 1 0
chr22:41347887|41347994 hsa-miR-4433b-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6734-5p 1 0 0
chr22:41347887|41347994 hsa-miR-4433a-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6765-5p 1 0 0
chr22:41347887|41347994 hsa-miR-7106-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6817-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6798-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6782-5p 1 1 0
chr22:41347887|41347994 hsa-miR-6728-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6847-5p 0 1 0
chr22:41347887|41347994 hsa-miR-149-3p 1 1 0
chr22:41347887|41347994 hsa-miR-3189-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6801-5p 0 1 0
chr22:41347887|41347994 hsa-miR-19b-1-5p 0 1 0
chr22:41347887|41347994 hsa-miR-6885-3p 0 1 0
chr22:41347887|41347994 hsa-miR-4423-5p 0 1 0
chr22:41347887|41347994 hsa-miR-4763-3p 1 0 0
chr22:41347887|41347994 hsa-miR-6778-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6787-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6816-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6726-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6756-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6803-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6779-5p 1 0 0
chr22:41347887|41347994 hsa-miR-5196-5p 1 1 0
chr22:41347887|41347994 hsa-miR-6780b-5p 0 1 0
chr22:41347887|41347994 hsa-miR-4725-3p 0 1 0
chr22:41347887|41347994 hsa-miR-4726-5p 1 0 0
chr22:41347887|41347994 hsa-miR-6858-5p 1 1 0
chr22:41347887|41347994 hsa-miR-6799-3p 0 1 0
chr22:41347887|41347994 hsa-miR-4700-5p 1 1 0
chr22:41347887|41347994 hsa-miR-4747-5p 1 1 0
chr22:41347887|41347994 hsa-miR-6791-5p 0 1 0
chr22:41347887|41347994 hsa-miR-6753-3p 0 1 0
chr22:41347887|41347994 hsa-miR-7107-3p 0 1 0
chr22:41347887|41347994 hsa-miR-4723-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6769b-3p 0 1 0
chr22:41347887|41347994 hsa-miR-6764-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:41347887|41347994
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MEAERQDHRPWDSLPHSSDPGQGLQGPSCPSPA
Nucleotide Sequence CTGGAAGCAGAGAGGCAAGACCACAGACCCTGGGATTCCCTTCCTCACTCCTCTGACCCAGGGCAGGGCTTGCAGGGACCCAGCTGTCCTTCCCCAGCT
CircID chr22:41347887|41347994
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MGKDSWVPASPALGQRSEEGNPRVCGLASLLPAH
Nucleotide Sequence CTGGGGAAGGACAGCTGGGTCCCTGCAAGCCCTGCCCTGGGTCAGAGGAGTGAGGAAGGGAATCCCAGGGTCTGTGGTCTTGCCTCTCTGCTTCCAGCTCAC
CircID chr22:41347887|41347994
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MQALPWVRGVRKGIPGSVVLPLCFQLT
Nucleotide Sequence CTGCAAGCCCTGCCCTGGGTCAGAGGAGTGAGGAAGGGAATCCCAGGGTCTGTGGTCTTGCCTCTCTGCTTCCAGCTCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab