CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41526286|41526443
Strand -
CircType exon
Host Gene ENSG00000100412.14;
Algorism CIRI2;
Sequence CACATCTCAGCTGCTGGCCCCTGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAACCTGCTCATTGGTGCCATCAACATTGAAAACGGCAAGGCCAACTCCGTGCGCAATGCCGTCACTCAGGAGTTTGGCCCCGTCCCTGACACTGCCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41526286|41526443 hsa-miR-34a-5p 0 0 1
chr22:41526286|41526443 hsa-miR-34a-3p 0 0 1
chr22:41526286|41526443 hsa-miR-183-5p 0 0 1
chr22:41526286|41526443 hsa-miR-183-3p 0 0 1
chr22:41526286|41526443 hsa-miR-143-5p 0 0 1
chr22:41526286|41526443 hsa-miR-143-3p 0 0 1
chr22:41526286|41526443 hsa-miR-449a 0 0 1
chr22:41526286|41526443 hsa-miR-571 0 0 1
chr22:41526286|41526443 hsa-miR-620 0 0 1
chr22:41526286|41526443 hsa-miR-646 0 0 1
chr22:41526286|41526443 hsa-miR-449b-5p 0 0 1
chr22:41526286|41526443 hsa-miR-449b-3p 0 0 1
chr22:41526286|41526443 hsa-miR-657 0 0 1
chr22:41526286|41526443 hsa-miR-1200 0 0 1
chr22:41526286|41526443 hsa-miR-1305 0 0 1
chr22:41526286|41526443 hsa-miR-1256 0 0 1
chr22:41526286|41526443 hsa-miR-1270 0 0 1
chr22:41526286|41526443 hsa-miR-576-3p 0 0 1
chr22:41526286|41526443 hsa-miR-409-3p 0 0 1
chr22:41526286|41526443 hsa-miR-34c-5p 0 0 1
chr22:41526286|41526443 hsa-miR-557 1 0 0
chr22:41526286|41526443 hsa-miR-762 1 0 0
chr22:41526286|41526443 hsa-miR-1303 1 0 0
chr22:41526286|41526443 hsa-miR-2861 1 0 0
chr22:41526286|41526443 hsa-miR-4688 1 0 0
chr22:41526286|41526443 hsa-miR-6860 1 0 0
chr22:41526286|41526443 hsa-miR-8075 1 0 0
chr22:41526286|41526443 hsa-miR-6765-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6857-5p 1 0 0
chr22:41526286|41526443 hsa-miR-4687-3p 1 0 0
chr22:41526286|41526443 hsa-miR-6799-5p 1 0 0
chr22:41526286|41526443 hsa-miR-1227-5p 1 0 0
chr22:41526286|41526443 hsa-miR-593-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6721-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6798-5p 1 0 0
chr22:41526286|41526443 hsa-miR-5006-5p 1 0 0
chr22:41526286|41526443 hsa-miR-1226-5p 1 0 0
chr22:41526286|41526443 hsa-miR-4640-5p 1 0 0
chr22:41526286|41526443 hsa-miR-937-5p 1 0 0
chr22:41526286|41526443 hsa-miR-652-3p 1 0 0
chr22:41526286|41526443 hsa-miR-4763-3p 1 0 0
chr22:41526286|41526443 hsa-miR-6787-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6816-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6743-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6851-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6879-5p 1 0 0
chr22:41526286|41526443 hsa-miR-1909-3p 1 0 0
chr22:41526286|41526443 hsa-miR-4649-5p 1 0 0
chr22:41526286|41526443 hsa-miR-4726-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6729-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6858-5p 1 0 0
chr22:41526286|41526443 hsa-miR-365a-5p 1 0 0
chr22:41526286|41526443 hsa-miR-365b-5p 1 0 0
chr22:41526286|41526443 hsa-miR-1914-3p 1 0 0
chr22:41526286|41526443 hsa-miR-3184-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6724-5p 1 0 0
chr22:41526286|41526443 hsa-miR-6837-5p 1 0 0
chr22:41526286|41526443 hsa-miR-4676-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:41526286|41526443
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MDNISNNLLIGAINIENGKANSVRNAVTQEFGPVPDTA
Nucleotide Sequence TTGGATAACATCTCCAACAACCTGCTCATTGGTGCCATCAACATTGAAAACGGCAAGGCCAACTCCGTGCGCAATGCCGTCACTCAGGAGTTTGGCCCCGTCCCTGACACTGCC
CircID chr22:41526286|41526443
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MLAPGSSSVGTWITSPTTCSLVPSTLKTARPTPCAMPSLRSLAPSLTLP
Nucleotide Sequence CTGCTGGCCCCTGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAACCTGCTCATTGGTGCCATCAACATTGAAAACGGCAAGGCCAACTCCGTGCGCAATGCCGTCACTCAGGAGTTTGGCCCCGTCCCTGACACTGCCC
CircID chr22:41526286|41526443
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MRTELALPFSMLMAPMSRLLEMLSKCPRNLSQGPAAEM
Nucleotide Sequence TTGCGCACGGAGTTGGCCTTGCCGTTTTCAATGTTGATGGCACCAATGAGCAGGTTGTTGGAGATGTTATCCAAGTGCCCACGGAACTTGAGCCAGGGGCCAGCAGCTGAGATG
CircID chr22:41526286|41526443
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MSDGIAHGVGLAVFNVDGTNEQVVGDVIQVPTELEPGASS
Nucleotide Sequence CTGAGTGACGGCATTGCGCACGGAGTTGGCCTTGCCGTTTTCAATGTTGATGGCACCAATGAGCAGGTTGTTGGAGATGTTATCCAAGTGCCCACGGAACTTGAGCCAGGGGCCAGCAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab