CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41663631|41663881
Strand +
CircType exon
Host Gene ENSG00000196419.11;
Algorism CIRI2;
Sequence TGGCTGAGGACAAGGCCAGGCAGCCTGGCCACACTGCGGAAGGGCAGCTGGACGCGCGGCCTCTGGTCAGTCCTGGAAGTGCTTGGTGAGGGCTTCCAGCAGCTCCTGCTTCTTCAGCCCACTCTTCAGCCCGTAAGCCCGGCAGGCCTCTTTCAGCATGGGCACAGTGAACTTGCCCAGCGTACCCTTGCTGATGTGGGTCTTCAGCTCCTCTTCTGAATACTCCACCTTGGGCCTTTTGCTTCCAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41663631|41663881 hsa-miR-22-5p 0 0 1
chr22:41663631|41663881 hsa-miR-22-3p 0 0 1
chr22:41663631|41663881 hsa-miR-496 0 0 1
chr22:41663631|41663881 hsa-miR-545-5p 0 0 1
chr22:41663631|41663881 hsa-miR-545-3p 0 0 1
chr22:41663631|41663881 hsa-miR-558 0 1 1
chr22:41663631|41663881 hsa-miR-583 0 0 1
chr22:41663631|41663881 hsa-miR-612 0 1 1
chr22:41663631|41663881 hsa-miR-661 0 0 1
chr22:41663631|41663881 hsa-miR-708-5p 0 0 1
chr22:41663631|41663881 hsa-miR-708-3p 0 0 1
chr22:41663631|41663881 hsa-miR-665 0 0 1
chr22:41663631|41663881 hsa-miR-938 0 0 1
chr22:41663631|41663881 hsa-miR-663b 0 0 1
chr22:41663631|41663881 hsa-miR-1208 0 0 1
chr22:41663631|41663881 hsa-miR-1287-5p 0 0 1
chr22:41663631|41663881 hsa-miR-1287-3p 0 0 1
chr22:41663631|41663881 hsa-miR-1299 0 0 1
chr22:41663631|41663881 hsa-miR-548p 0 0 1
chr22:41663631|41663881 hsa-miR-671-5p 1 1 1
chr22:41663631|41663881 hsa-miR-28-5p 0 0 1
chr22:41663631|41663881 hsa-miR-875-3p 0 0 1
chr22:41663631|41663881 hsa-miR-644 0 0 1
chr22:41663631|41663881 hsa-miR-1285 0 0 1
chr22:41663631|41663881 hsa-miR-516b 0 0 1
chr22:41663631|41663881 hsa-miR-1254 0 0 1
chr22:41663631|41663881 hsa-miR-596 1 0 0
chr22:41663631|41663881 hsa-miR-762 1 0 0
chr22:41663631|41663881 hsa-miR-298 1 0 0
chr22:41663631|41663881 hsa-miR-920 0 1 0
chr22:41663631|41663881 hsa-miR-2861 1 0 0
chr22:41663631|41663881 hsa-miR-3141 1 0 0
chr22:41663631|41663881 hsa-miR-3154 0 1 0
chr22:41663631|41663881 hsa-miR-3174 1 0 0
chr22:41663631|41663881 hsa-miR-3185 1 1 0
chr22:41663631|41663881 hsa-miR-3188 1 0 0
chr22:41663631|41663881 hsa-miR-4302 0 1 0
chr22:41663631|41663881 hsa-miR-4312 0 1 0
chr22:41663631|41663881 hsa-miR-4265 1 0 0
chr22:41663631|41663881 hsa-miR-4481 1 1 0
chr22:41663631|41663881 hsa-miR-4498 1 0 0
chr22:41663631|41663881 hsa-miR-4513 0 1 0
chr22:41663631|41663881 hsa-miR-4533 1 0 0
chr22:41663631|41663881 hsa-miR-1587 1 0 0
chr22:41663631|41663881 hsa-miR-4656 1 1 0
chr22:41663631|41663881 hsa-miR-4734 1 0 0
chr22:41663631|41663881 hsa-miR-4739 1 0 0
chr22:41663631|41663881 hsa-miR-4741 1 0 0
chr22:41663631|41663881 hsa-miR-4751 0 1 0
chr22:41663631|41663881 hsa-miR-6079 0 1 0
chr22:41663631|41663881 hsa-miR-6085 1 1 0
chr22:41663631|41663881 hsa-miR-6165 0 1 0
chr22:41663631|41663881 hsa-miR-6860 0 1 0
chr22:41663631|41663881 hsa-miR-4435 0 1 0
chr22:41663631|41663881 hsa-miR-4433b-3p 1 0 0
chr22:41663631|41663881 hsa-miR-4700-3p 1 0 0
chr22:41663631|41663881 hsa-miR-4433a-3p 1 0 0
chr22:41663631|41663881 hsa-miR-27a-5p 1 1 0
chr22:41663631|41663881 hsa-miR-6089 1 1 0
chr22:41663631|41663881 hsa-miR-6880-5p 1 1 0
chr22:41663631|41663881 hsa-miR-7847-3p 1 0 0
chr22:41663631|41663881 hsa-miR-4695-5p 1 0 0
chr22:41663631|41663881 hsa-miR-4709-3p 0 1 0
chr22:41663631|41663881 hsa-miR-3677-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6730-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6762-3p 0 1 0
chr22:41663631|41663881 hsa-miR-7108-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6829-5p 1 0 0
chr22:41663631|41663881 hsa-miR-3667-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6874-5p 0 1 0
chr22:41663631|41663881 hsa-miR-5008-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6882-3p 0 1 0
chr22:41663631|41663881 hsa-miR-6786-5p 1 0 0
chr22:41663631|41663881 hsa-miR-3944-3p 1 0 0
chr22:41663631|41663881 hsa-miR-296-3p 1 0 0
chr22:41663631|41663881 hsa-miR-4783-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6749-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6828-5p 1 1 0
chr22:41663631|41663881 hsa-miR-6877-5p 1 0 0
chr22:41663631|41663881 hsa-miR-516b-5p 0 1 0
chr22:41663631|41663881 hsa-miR-4687-5p 0 1 0
chr22:41663631|41663881 hsa-miR-744-5p 1 0 0
chr22:41663631|41663881 hsa-miR-1180-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6869-3p 0 1 0
chr22:41663631|41663881 hsa-miR-6814-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6837-3p 0 1 0
chr22:41663631|41663881 hsa-miR-6792-5p 0 1 0
chr22:41663631|41663881 hsa-miR-4766-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6841-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6812-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6865-5p 1 0 0
chr22:41663631|41663881 hsa-miR-5001-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6756-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6722-3p 0 1 0
chr22:41663631|41663881 hsa-miR-3620-5p 1 1 0
chr22:41663631|41663881 hsa-miR-4726-5p 1 0 0
chr22:41663631|41663881 hsa-miR-4745-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6846-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6848-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6858-5p 1 0 0
chr22:41663631|41663881 hsa-miR-3187-5p 0 1 0
chr22:41663631|41663881 hsa-miR-6831-5p 1 1 0
chr22:41663631|41663881 hsa-miR-939-5p 1 1 0
chr22:41663631|41663881 hsa-miR-1238-5p 1 0 0
chr22:41663631|41663881 hsa-miR-4758-5p 1 0 0
chr22:41663631|41663881 hsa-miR-7151-3p 1 0 0
chr22:41663631|41663881 hsa-miR-6766-5p 1 0 0
chr22:41663631|41663881 hsa-miR-6511a-3p 0 1 0
chr22:41663631|41663881 hsa-miR-6511b-3p 0 1 0
chr22:41663631|41663881 hsa-miR-3922-3p 0 1 0
chr22:41663631|41663881 hsa-miR-892c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr22:41663631|41663881
ORF Type ORF1
Protein Length 71
Nucleotide Length 216
Protein Sequence MRTRPGSLATLRKGSWTRGLWSVLEVLGEGFQQLLLLQPTLQPVSPAGLFQHGHSELAQRTLADVGLQLLF
Nucleotide Sequence CTGAGGACAAGGCCAGGCAGCCTGGCCACACTGCGGAAGGGCAGCTGGACGCGCGGCCTCTGGTCAGTCCTGGAAGTGCTTGGTGAGGGCTTCCAGCAGCTCCTGCTTCTTCAGCCCACTCTTCAGCCCGTAAGCCCGGCAGGCCTCTTTCAGCATGGGCACAGTGAACTTGCCCAGCGTACCCTTGCTGATGTGGGTCTTCAGCTCCTCTTCTGA
CircID chr22:41663631|41663881
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MGTVNLPSVPLLMWVFSSSSEYSTLGLLLPE
Nucleotide Sequence ATGGGCACAGTGAACTTGCCCAGCGTACCCTTGCTGATGTGGGTCTTCAGCTCCTCTTCTGAATACTCCACCTTGGGCCTTTTGCTTCCAGAA
CircID chr22:41663631|41663881
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MPGLRAEEWAEEAGAAGSPHQALPGLTRGRASSCPSAVWPGCLALSSA
Nucleotide Sequence CTGCCGGGCTTACGGGCTGAAGAGTGGGCTGAAGAAGCAGGAGCTGCTGGAAGCCCTCACCAAGCACTTCCAGGACTGACCAGAGGCCGCGCGTCCAGCTGCCCTTCCGCAGTGTGGCCAGGCTGCCTGGCCTTGTCCTCAGCC
CircID chr22:41663631|41663881
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD
Nucleotide Sequence CTGAAGACCCACATCAGCAAGGGTACGCTGGGCAAGTTCACTGTGCCCATGCTGAAAGAGGCCTGCCGGGCTTACGGGCTGAAGAGTGGGCTGAAGAAGCAGGAGCTGCTGGAAGCCCTCACCAAGCACTTCCAGGACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab