CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41825744|41825864
Strand +
CircType exon
Host Gene ENSG00000100147.12;
Algorism CIRI2;
Sequence CTGCCTCCTTGTGGCCCCCTGAGCCCTGAGCTGCTCCAGGGCTATAACTCAGACTGGGATCTGGAGATCCTTGGGCCTTTTCGGATCTCCTTCCGCTTCTCCTCTTTCTTTCGGCGTTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41825744|41825864 hsa-miR-583 0 0 1
chr22:41825744|41825864 hsa-miR-622 0 0 1
chr22:41825744|41825864 hsa-miR-646 0 0 1
chr22:41825744|41825864 hsa-miR-650 0 0 1
chr22:41825744|41825864 hsa-miR-766-5p 0 0 1
chr22:41825744|41825864 hsa-miR-766-3p 0 0 1
chr22:41825744|41825864 hsa-miR-1266-5p 0 0 1
chr22:41825744|41825864 hsa-miR-1266-3p 0 0 1
chr22:41825744|41825864 hsa-miR-1827 0 0 1
chr22:41825744|41825864 hsa-miR-129-3p 0 0 1
chr22:41825744|41825864 hsa-miR-24 0 0 1
chr22:41825744|41825864 hsa-miR-658 1 0 0
chr22:41825744|41825864 hsa-miR-765 1 1 0
chr22:41825744|41825864 hsa-miR-298 1 0 0
chr22:41825744|41825864 hsa-miR-3137 1 0 0
chr22:41825744|41825864 hsa-miR-4308 0 1 0
chr22:41825744|41825864 hsa-miR-4254 0 1 0
chr22:41825744|41825864 hsa-miR-3651 0 1 0
chr22:41825744|41825864 hsa-miR-3916 1 0 0
chr22:41825744|41825864 hsa-miR-4434 0 1 0
chr22:41825744|41825864 hsa-miR-4437 0 1 0
chr22:41825744|41825864 hsa-miR-4518 0 1 0
chr22:41825744|41825864 hsa-miR-4533 0 1 0
chr22:41825744|41825864 hsa-miR-4656 1 0 0
chr22:41825744|41825864 hsa-miR-4682 0 1 0
chr22:41825744|41825864 hsa-miR-4683 0 1 0
chr22:41825744|41825864 hsa-miR-4689 1 0 0
chr22:41825744|41825864 hsa-miR-4739 1 1 0
chr22:41825744|41825864 hsa-miR-4784 0 1 0
chr22:41825744|41825864 hsa-miR-5703 1 1 0
chr22:41825744|41825864 hsa-miR-6081 0 1 0
chr22:41825744|41825864 hsa-miR-12118 1 0 0
chr22:41825744|41825864 hsa-miR-12128 1 0 0
chr22:41825744|41825864 hsa-miR-4747-3p 1 0 0
chr22:41825744|41825864 hsa-miR-6765-5p 1 0 0
chr22:41825744|41825864 hsa-miR-6854-5p 0 1 0
chr22:41825744|41825864 hsa-miR-139-3p 1 0 0
chr22:41825744|41825864 hsa-miR-7847-3p 1 0 0
chr22:41825744|41825864 hsa-miR-6746-5p 1 0 0
chr22:41825744|41825864 hsa-miR-127-3p 0 1 0
chr22:41825744|41825864 hsa-miR-432-5p 0 1 0
chr22:41825744|41825864 hsa-miR-486-3p 0 1 0
chr22:41825744|41825864 hsa-miR-6760-5p 1 0 0
chr22:41825744|41825864 hsa-miR-2467-3p 1 0 0
chr22:41825744|41825864 hsa-miR-3150b-3p 0 1 0
chr22:41825744|41825864 hsa-miR-3934-3p 0 1 0
chr22:41825744|41825864 hsa-miR-5088-5p 1 1 0
chr22:41825744|41825864 hsa-miR-3127-5p 0 1 0
chr22:41825744|41825864 hsa-miR-877-5p 1 0 0
chr22:41825744|41825864 hsa-miR-6824-5p 1 0 0
chr22:41825744|41825864 hsa-miR-6877-5p 1 0 0
chr22:41825744|41825864 hsa-miR-6814-5p 0 1 0
chr22:41825744|41825864 hsa-miR-6768-3p 0 1 0
chr22:41825744|41825864 hsa-miR-6743-5p 1 0 0
chr22:41825744|41825864 hsa-miR-1249-5p 1 1 0
chr22:41825744|41825864 hsa-miR-4685-5p 1 1 0
chr22:41825744|41825864 hsa-miR-939-5p 1 0 0
chr22:41825744|41825864 hsa-miR-6856-5p 0 1 0
chr22:41825744|41825864 hsa-miR-6791-5p 1 1 0
chr22:41825744|41825864 hsa-miR-6762-5p 0 1 0
chr22:41825744|41825864 hsa-miR-7155-3p 0 1 0
chr22:41825744|41825864 hsa-miR-3136-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:41825744|41825864
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence LPPCGPLSPELLQGYNSDWDLEILGPFRISFRFSSFFRRF
Nucleotide Sequence CTGCCTCCTTGTGGCCCCCTGAGCCCTGAGCTGCTCCAGGGCTATAACTCAGACTGGGATCTGGAGATCCTTGGGCCTTTTCGGATCTCCTTCCGCTTCTCCTCTTTCTTTCGGCGTTTC
CircID chr22:41825744|41825864
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MSCSRAITQTGIWRSLGLFGSPSASPLSFGVS
Nucleotide Sequence CTGAGCTGCTCCAGGGCTATAACTCAGACTGGGATCTGGAGATCCTTGGGCCTTTTCGGATCTCCTTCCGCTTCTCCTCTTTCTTTCGGCGTTTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab