CircRNA Information

General Information
circRNA Basic Information
CircID chr22:41905804|41905992
Strand -
CircType exon
Host Gene ENSG00000198911.10;
Algorism CIRI2;
Sequence CCCTGGGCAGAGCCCCTTAAAGCTGCTGTCACTAGATGCCCATGGTCCAGGGCCTGGTGGGCGTGAGAGGATAGGTGGCAGGGCAGAAACTGGGCAGCCCTGACTTGATAGCAGCAGGGGGAGCTCCCAAGCTGCCAAGCCCCTGCCTCCAGCCTTCCTGAGTTTCTCTCTCCTGAACCCTACTCTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:41905804|41905992 hsa-miR-185-5p 0 0 1
chr22:41905804|41905992 hsa-miR-185-3p 0 0 1
chr22:41905804|41905992 hsa-miR-370-5p 0 0 1
chr22:41905804|41905992 hsa-miR-370-3p 0 0 1
chr22:41905804|41905992 hsa-miR-510-5p 0 0 1
chr22:41905804|41905992 hsa-miR-510-3p 0 0 1
chr22:41905804|41905992 hsa-miR-591 0 1 1
chr22:41905804|41905992 hsa-miR-646 0 0 1
chr22:41905804|41905992 hsa-miR-650 0 0 1
chr22:41905804|41905992 hsa-miR-874-5p 0 0 1
chr22:41905804|41905992 hsa-miR-874-3p 0 0 1
chr22:41905804|41905992 hsa-miR-873-5p 0 0 1
chr22:41905804|41905992 hsa-miR-873-3p 0 0 1
chr22:41905804|41905992 hsa-miR-760 0 0 1
chr22:41905804|41905992 hsa-miR-920 0 0 1
chr22:41905804|41905992 hsa-miR-940 0 0 1
chr22:41905804|41905992 hsa-miR-1291 0 0 1
chr22:41905804|41905992 hsa-miR-1827 0 0 1
chr22:41905804|41905992 hsa-miR-885-3p 0 0 1
chr22:41905804|41905992 hsa-miR-296-3p 1 0 1
chr22:41905804|41905992 hsa-miR-146b-3p 0 0 1
chr22:41905804|41905992 hsa-miR-1207-5p 0 1 1
chr22:41905804|41905992 hsa-miR-324-3p 0 0 1
chr22:41905804|41905992 hsa-miR-542-3p 0 0 1
chr22:41905804|41905992 hsa-miR-544 0 0 1
chr22:41905804|41905992 hsa-miR-346 1 0 0
chr22:41905804|41905992 hsa-miR-637 1 0 0
chr22:41905804|41905992 hsa-miR-762 1 1 0
chr22:41905804|41905992 hsa-miR-3132 1 0 0
chr22:41905804|41905992 hsa-miR-3170 1 1 0
chr22:41905804|41905992 hsa-miR-3175 1 1 0
chr22:41905804|41905992 hsa-miR-4259 1 0 0
chr22:41905804|41905992 hsa-miR-4270 1 0 0
chr22:41905804|41905992 hsa-miR-3652 0 1 0
chr22:41905804|41905992 hsa-miR-4430 0 1 0
chr22:41905804|41905992 hsa-miR-4443 0 1 0
chr22:41905804|41905992 hsa-miR-3135b 0 1 0
chr22:41905804|41905992 hsa-miR-4469 1 0 0
chr22:41905804|41905992 hsa-miR-4476 0 1 0
chr22:41905804|41905992 hsa-miR-4510 0 1 0
chr22:41905804|41905992 hsa-miR-4516 1 0 0
chr22:41905804|41905992 hsa-miR-4538 0 1 0
chr22:41905804|41905992 hsa-miR-4644 1 1 0
chr22:41905804|41905992 hsa-miR-4689 1 0 0
chr22:41905804|41905992 hsa-miR-4739 1 1 0
chr22:41905804|41905992 hsa-miR-5192 1 0 0
chr22:41905804|41905992 hsa-miR-5739 1 0 0
chr22:41905804|41905992 hsa-miR-5787 1 0 0
chr22:41905804|41905992 hsa-miR-6085 0 1 0
chr22:41905804|41905992 hsa-miR-6090 1 0 0
chr22:41905804|41905992 hsa-miR-6125 1 0 0
chr22:41905804|41905992 hsa-miR-6127 1 0 0
chr22:41905804|41905992 hsa-miR-6133 1 1 0
chr22:41905804|41905992 hsa-miR-8085 1 0 0
chr22:41905804|41905992 hsa-miR-8089 1 0 0
chr22:41905804|41905992 hsa-miR-9903 0 1 0
chr22:41905804|41905992 hsa-miR-6734-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4433a-3p 1 0 0
chr22:41905804|41905992 hsa-miR-3150a-3p 1 0 0
chr22:41905804|41905992 hsa-miR-27a-5p 0 1 0
chr22:41905804|41905992 hsa-miR-125a-3p 1 0 0
chr22:41905804|41905992 hsa-miR-224-5p 0 1 0
chr22:41905804|41905992 hsa-miR-6089 1 0 0
chr22:41905804|41905992 hsa-miR-6873-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4695-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6746-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6727-5p 1 0 0
chr22:41905804|41905992 hsa-miR-197-5p 1 0 0
chr22:41905804|41905992 hsa-miR-8069 1 0 0
chr22:41905804|41905992 hsa-miR-6772-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6796-5p 1 0 0
chr22:41905804|41905992 hsa-miR-23a-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6798-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6760-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6782-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6888-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6882-3p 0 1 0
chr22:41905804|41905992 hsa-miR-5088-5p 1 0 0
chr22:41905804|41905992 hsa-miR-1229-5p 1 1 0
chr22:41905804|41905992 hsa-miR-4715-3p 0 1 0
chr22:41905804|41905992 hsa-miR-5001-3p 1 0 0
chr22:41905804|41905992 hsa-miR-6771-5p 1 0 0
chr22:41905804|41905992 hsa-miR-7111-3p 0 1 0
chr22:41905804|41905992 hsa-miR-3690 0 1 0
chr22:41905804|41905992 hsa-miR-4446-3p 0 1 0
chr22:41905804|41905992 hsa-miR-4733-3p 0 1 0
chr22:41905804|41905992 hsa-miR-4776-5p 0 1 0
chr22:41905804|41905992 hsa-miR-887-5p 0 1 0
chr22:41905804|41905992 hsa-miR-1911-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6752-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6738-3p 0 1 0
chr22:41905804|41905992 hsa-miR-3173-5p 0 1 0
chr22:41905804|41905992 hsa-miR-1233-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4763-3p 1 1 0
chr22:41905804|41905992 hsa-miR-6787-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6893-5p 0 1 0
chr22:41905804|41905992 hsa-miR-1343-5p 1 0 0
chr22:41905804|41905992 hsa-miR-5001-5p 1 1 0
chr22:41905804|41905992 hsa-miR-6754-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6813-5p 0 1 0
chr22:41905804|41905992 hsa-miR-1249-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6722-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6797-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6808-5p 0 1 0
chr22:41905804|41905992 hsa-miR-6879-5p 1 0 0
chr22:41905804|41905992 hsa-miR-3620-5p 1 0 0
chr22:41905804|41905992 hsa-miR-5196-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6780b-5p 1 0 0
chr22:41905804|41905992 hsa-miR-1909-3p 1 1 0
chr22:41905804|41905992 hsa-miR-328-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4745-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6735-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4758-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6731-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6758-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6856-5p 1 0 0
chr22:41905804|41905992 hsa-miR-6799-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6855-5p 1 1 0
chr22:41905804|41905992 hsa-miR-6876-5p 0 1 0
chr22:41905804|41905992 hsa-miR-6891-5p 1 0 0
chr22:41905804|41905992 hsa-miR-4722-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6727-3p 1 1 0
chr22:41905804|41905992 hsa-miR-6893-3p 0 1 0
chr22:41905804|41905992 hsa-miR-6805-3p 1 0 0
chr22:41905804|41905992 hsa-miR-6775-3p 0 1 0
chr22:41905804|41905992 hsa-miR-3622a-3p 1 0 0
chr22:41905804|41905992 hsa-miR-4756-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:41905804|41905992
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MLSLDAHGPGPGGRERIGGRAETGQP
Nucleotide Sequence CTGCTGTCACTAGATGCCCATGGTCCAGGGCCTGGTGGGCGTGAGAGGATAGGTGGCAGGGCAGAAACTGGGCAGCCCTGA
CircID chr22:41905804|41905992
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MAAWELPLLLSSQGCPVSALPPILSRPPGPGPWASSDSSFKGLCPG
Nucleotide Sequence TTGGCAGCTTGGGAGCTCCCCCTGCTGCTATCAAGTCAGGGCTGCCCAGTTTCTGCCCTGCCACCTATCCTCTCACGCCCACCAGGCCCTGGACCATGGGCATCTAGTGACAGCAGCTTTAAGGGGCTCTGCCCAGGG
CircID chr22:41905804|41905992
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MEAGAWQLGSSPCCYQVRAAQFLPCHLSSHAHQALDHGHLVTAALRGSAQ
Nucleotide Sequence CTGGAGGCAGGGGCTTGGCAGCTTGGGAGCTCCCCCTGCTGCTATCAAGTCAGGGCTGCCCAGTTTCTGCCCTGCCACCTATCCTCTCACGCCCACCAGGCCCTGGACCATGGGCATCTAGTGACAGCAGCTTTAAGGGGCTCTGCCCAG
CircID chr22:41905804|41905992
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MGAPPAAIKSGLPSFCPATYPLTPTRPWTMGI
Nucleotide Sequence TTGGGAGCTCCCCCTGCTGCTATCAAGTCAGGGCTGCCCAGTTTCTGCCCTGCCACCTATCCTCTCACGCCCACCAGGCCCTGGACCATGGGCATCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab