CircRNA Information

General Information
circRNA Basic Information
CircID chr22:42568008|42568300
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTAATCCCAGTACTTTGGGAAACTGAGGCGGGAGGATAGCTTGAGCCCAGGCATTCAAGACCAGCCTGGGCAACATGGCAAGACCCTGTCTCTACAAAAGTAAAAAATTTAGCTGGGTGTGGTAGCGCACACCTGTAGTCCTAGCCACTCCGGAGGCTGAGGTGGGAAGATCACTTCAGCCCAGGAGGTTGAAGCTGTGTGAGCCATAATTGAGCCATGGCACTCCAGTCCGGGTGACAGAGGGAGACCCTGTCTCTACAATTCAAATAGACCGAACACTGTGGCTCATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:42568008|42568300 hsa-miR-122-5p 0 0 1
chr22:42568008|42568300 hsa-miR-122-3p 0 0 1
chr22:42568008|42568300 hsa-miR-377-5p 0 0 1
chr22:42568008|42568300 hsa-miR-377-3p 0 0 1
chr22:42568008|42568300 hsa-miR-135b-5p 0 0 1
chr22:42568008|42568300 hsa-miR-135b-3p 0 0 1
chr22:42568008|42568300 hsa-miR-431-5p 0 0 1
chr22:42568008|42568300 hsa-miR-431-3p 0 0 1
chr22:42568008|42568300 hsa-miR-552-5p 0 0 1
chr22:42568008|42568300 hsa-miR-552-3p 0 0 1
chr22:42568008|42568300 hsa-miR-573 0 1 1
chr22:42568008|42568300 hsa-miR-661 0 1 1
chr22:42568008|42568300 hsa-miR-933 0 0 1
chr22:42568008|42568300 hsa-miR-1182 0 1 1
chr22:42568008|42568300 hsa-miR-1203 0 0 1
chr22:42568008|42568300 hsa-miR-548k 0 0 1
chr22:42568008|42568300 hsa-miR-1278 0 0 1
chr22:42568008|42568300 hsa-miR-193a-5p 0 0 1
chr22:42568008|42568300 hsa-miR-1224-3p 0 1 1
chr22:42568008|42568300 hsa-miR-188-3p 0 0 1
chr22:42568008|42568300 hsa-miR-140-3p 0 0 1
chr22:42568008|42568300 hsa-miR-513a-3p 0 0 1
chr22:42568008|42568300 hsa-miR-342-3p 0 1 1
chr22:42568008|42568300 hsa-miR-1260 0 0 1
chr22:42568008|42568300 hsa-miR-1280 0 0 1
chr22:42568008|42568300 hsa-miR-128 0 0 1
chr22:42568008|42568300 hsa-miR-642 0 0 1
chr22:42568008|42568300 hsa-miR-135a 0 0 1
chr22:42568008|42568300 hsa-miR-219-2-3p 0 0 1
chr22:42568008|42568300 hsa-miR-1254 0 0 1
chr22:42568008|42568300 hsa-miR-24 0 0 1
chr22:42568008|42568300 hsa-miR-1245 0 0 1
chr22:42568008|42568300 hsa-miR-762 1 0 0
chr22:42568008|42568300 hsa-miR-1303 1 1 0
chr22:42568008|42568300 hsa-miR-1260a 0 1 0
chr22:42568008|42568300 hsa-miR-3159 0 1 0
chr22:42568008|42568300 hsa-miR-1260b 0 1 0
chr22:42568008|42568300 hsa-miR-378g 0 1 0
chr22:42568008|42568300 hsa-miR-4437 0 1 0
chr22:42568008|42568300 hsa-miR-4469 0 1 0
chr22:42568008|42568300 hsa-miR-4515 0 1 0
chr22:42568008|42568300 hsa-miR-1587 0 1 0
chr22:42568008|42568300 hsa-miR-5787 1 0 0
chr22:42568008|42568300 hsa-miR-6069 1 1 0
chr22:42568008|42568300 hsa-miR-141-5p 0 1 0
chr22:42568008|42568300 hsa-miR-128-3p 0 1 0
chr22:42568008|42568300 hsa-miR-504-3p 0 1 0
chr22:42568008|42568300 hsa-miR-1915-5p 0 1 0
chr22:42568008|42568300 hsa-miR-423-3p 1 0 0
chr22:42568008|42568300 hsa-miR-6868-3p 0 1 0
chr22:42568008|42568300 hsa-miR-6782-5p 1 0 0
chr22:42568008|42568300 hsa-miR-939-3p 0 1 0
chr22:42568008|42568300 hsa-miR-4446-3p 1 0 0
chr22:42568008|42568300 hsa-miR-941 1 0 0
chr22:42568008|42568300 hsa-miR-6781-5p 1 0 0
chr22:42568008|42568300 hsa-miR-211-5p 0 1 0
chr22:42568008|42568300 hsa-miR-4776-3p 0 1 0
chr22:42568008|42568300 hsa-miR-660-3p 0 1 0
chr22:42568008|42568300 hsa-miR-6867-3p 0 1 0
chr22:42568008|42568300 hsa-miR-6832-5p 0 1 0
chr22:42568008|42568300 hsa-miR-2276-5p 0 1 0
chr22:42568008|42568300 hsa-miR-216a-3p 0 1 0
chr22:42568008|42568300 hsa-miR-4524a-3p 0 1 0
chr22:42568008|42568300 hsa-miR-204-5p 0 1 0
chr22:42568008|42568300 hsa-miR-676-5p 0 1 0
chr22:42568008|42568300 hsa-miR-7158-5p 0 1 0
chr22:42568008|42568300 hsa-miR-4524b-3p 0 1 0
chr22:42568008|42568300 hsa-miR-5001-5p 1 0 0
chr22:42568008|42568300 hsa-miR-6774-5p 0 1 0
chr22:42568008|42568300 hsa-miR-3620-5p 0 1 0
chr22:42568008|42568300 hsa-miR-4685-5p 1 0 0
chr22:42568008|42568300 hsa-miR-6783-3p 0 1 0
chr22:42568008|42568300 hsa-miR-619-5p 0 1 0
chr22:42568008|42568300 hsa-miR-340-3p 0 1 0
chr22:42568008|42568300 hsa-miR-106b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:42568008|42568300
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MRREDSLSPGIQDQPGQHGKTLSLQK
Nucleotide Sequence CTGAGGCGGGAGGATAGCTTGAGCCCAGGCATTCAAGACCAGCCTGGGCAACATGGCAAGACCCTGTCTCTACAAAAGTAA
CircID chr22:42568008|42568300
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MSHGTPVRVTEGDPVSTIQIDRTLWLM
Nucleotide Sequence TTGAGCCATGGCACTCCAGTCCGGGTGACAGAGGGAGACCCTGTCTCTACAATTCAAATAGACCGAACACTGTGGCTCATG
CircID chr22:42568008|42568300
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MSPGLECHGSIMAHTASTSWAEVIFPPQPPEWLGLQVCATTPS
Nucleotide Sequence CTGTCACCCGGACTGGAGTGCCATGGCTCAATTATGGCTCACACAGCTTCAACCTCCTGGGCTGAAGTGATCTTCCCACCTCAGCCTCCGGAGTGGCTAGGACTACAGGTGTGCGCTACCACACCCAGCTAA
CircID chr22:42568008|42568300
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MNCRDRVSLCHPDWSAMAQLWLTQLQPPGLK
Nucleotide Sequence TTGAATTGTAGAGACAGGGTCTCCCTCTGTCACCCGGACTGGAGTGCCATGGCTCAATTATGGCTCACACAGCTTCAACCTCCTGGGCTGAAGTGA
CircID chr22:42568008|42568300
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MLPRLVLNAWAQAILPPQFPKVLGLQ
Nucleotide Sequence ATGTTGCCCAGGCTGGTCTTGAATGCCTGGGCTCAAGCTATCCTCCCGCCTCAGTTTCCCAAAGTACTGGGATTACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab