CircRNA Information

General Information
circRNA Basic Information
CircID chr22:42695368|42695516
Strand +
CircType exon
Host Gene ENSG00000128274.14;
Algorism CIRI2;
Sequence CTCTCTGCAATGGGCTGCCCAGGCTGGTCAGTTACCAGCCAGTGACATCAGCGAGGTTCCCTGCTCTCTACCCTGGGAAGGGCCCAGCCTAAGTTACCAAGCCCCAGGCTCCCAGTACCACCCTCAGCCTATGTGGATTGCCACCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:42695368|42695516 hsa-miR-608 1 0 1
chr22:42695368|42695516 hsa-miR-612 0 0 1
chr22:42695368|42695516 hsa-miR-661 0 0 1
chr22:42695368|42695516 hsa-miR-668-5p 0 0 1
chr22:42695368|42695516 hsa-miR-668-3p 0 0 1
chr22:42695368|42695516 hsa-miR-892b 0 0 1
chr22:42695368|42695516 hsa-miR-920 0 0 1
chr22:42695368|42695516 hsa-miR-1293 0 0 1
chr22:42695368|42695516 hsa-miR-296-5p 0 0 1
chr22:42695368|42695516 hsa-miR-342-5p 0 0 1
chr22:42695368|42695516 hsa-miR-1285 0 0 1
chr22:42695368|42695516 hsa-miR-720 0 0 1
chr22:42695368|42695516 hsa-miR-637 1 0 0
chr22:42695368|42695516 hsa-miR-762 1 0 0
chr22:42695368|42695516 hsa-miR-940 1 0 0
chr22:42695368|42695516 hsa-miR-1268a 1 0 0
chr22:42695368|42695516 hsa-miR-2861 1 0 0
chr22:42695368|42695516 hsa-miR-3132 1 0 0
chr22:42695368|42695516 hsa-miR-3196 1 0 0
chr22:42695368|42695516 hsa-miR-1268b 1 0 0
chr22:42695368|42695516 hsa-miR-4498 1 0 0
chr22:42695368|42695516 hsa-miR-4507 1 0 0
chr22:42695368|42695516 hsa-miR-1587 1 0 0
chr22:42695368|42695516 hsa-miR-4651 1 0 0
chr22:42695368|42695516 hsa-miR-4656 1 0 0
chr22:42695368|42695516 hsa-miR-4706 1 0 0
chr22:42695368|42695516 hsa-miR-4739 1 0 0
chr22:42695368|42695516 hsa-miR-5787 1 0 0
chr22:42695368|42695516 hsa-miR-6090 1 0 0
chr22:42695368|42695516 hsa-miR-6133 1 0 0
chr22:42695368|42695516 hsa-miR-8089 1 0 0
chr22:42695368|42695516 hsa-miR-12119 1 0 0
chr22:42695368|42695516 hsa-miR-150-3p 1 0 0
chr22:42695368|42695516 hsa-miR-7155-5p 1 0 0
chr22:42695368|42695516 hsa-miR-7106-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6728-5p 1 0 0
chr22:42695368|42695516 hsa-miR-3192-5p 1 0 0
chr22:42695368|42695516 hsa-miR-7160-5p 1 0 0
chr22:42695368|42695516 hsa-miR-197-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6776-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6732-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6827-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6782-5p 1 0 0
chr22:42695368|42695516 hsa-miR-1226-5p 1 0 0
chr22:42695368|42695516 hsa-miR-4690-5p 1 0 0
chr22:42695368|42695516 hsa-miR-4732-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6749-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6834-5p 1 0 0
chr22:42695368|42695516 hsa-miR-664b-5p 1 0 0
chr22:42695368|42695516 hsa-miR-1250-5p 1 0 0
chr22:42695368|42695516 hsa-miR-1207-5p 1 0 0
chr22:42695368|42695516 hsa-miR-4763-3p 1 0 0
chr22:42695368|42695516 hsa-miR-6812-5p 1 0 0
chr22:42695368|42695516 hsa-miR-5001-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6726-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6737-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6752-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6756-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6803-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6819-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6842-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6851-5p 1 0 0
chr22:42695368|42695516 hsa-miR-7107-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6722-3p 1 0 0
chr22:42695368|42695516 hsa-miR-6751-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6779-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6808-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6879-5p 1 0 0
chr22:42695368|42695516 hsa-miR-3620-5p 1 0 0
chr22:42695368|42695516 hsa-miR-5196-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6836-5p 1 0 0
chr22:42695368|42695516 hsa-miR-10396b-5p 1 0 0
chr22:42695368|42695516 hsa-miR-1909-3p 1 0 0
chr22:42695368|42695516 hsa-miR-328-5p 1 0 0
chr22:42695368|42695516 hsa-miR-4685-5p 1 0 0
chr22:42695368|42695516 hsa-miR-4749-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6735-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6846-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6848-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6731-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6791-5p 1 0 0
chr22:42695368|42695516 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:42695368|42695516
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLSTLGRAQPKLPSPRLPVPPSAYVDCHP
Nucleotide Sequence CTGCTCTCTACCCTGGGAAGGGCCCAGCCTAAGTTACCAAGCCCCAGGCTCCCAGTACCACCCTCAGCCTATGTGGATTGCCACCCC
CircID chr22:42695368|42695516
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MQWAAQAGQLPASDISEVPCSLPWEGPSLSYQAPGSQYHPQPMWIATP
Nucleotide Sequence CTGCAATGGGCTGCCCAGGCTGGTCAGTTACCAGCCAGTGACATCAGCGAGGTTCCCTGCTCTCTACCCTGGGAAGGGCCCAGCCTAAGTTACCAAGCCCCAGGCTCCCAGTACCACCCTCAGCCTATGTGGATTGCCACCCCA
CircID chr22:42695368|42695516
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MPRLVSYQPVTSARFPALYPGKGPA
Nucleotide Sequence CTGCCCAGGCTGGTCAGTTACCAGCCAGTGACATCAGCGAGGTTCCCTGCTCTCTACCCTGGGAAGGGCCCAGCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab