CircRNA Information

General Information
circRNA Basic Information
CircID chr22:44496602|44496733
Strand +
CircType exon
Host Gene ENSG00000188636.3;
Algorism CIRI2;
Sequence CTCCCTTCTTGCCTCTCCAGACGTGTTCCCCGAGGAGATCTTCCTTCCGTCCTTCCTGGCGCCCTGGTTGCCCACCTTGCCGTGCTTCCTCTTACGTGCTAGCTTTGTACCTATCGCTCACTGCATGCTCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:44496602|44496733 hsa-miR-31-5p 0 0 1
chr22:44496602|44496733 hsa-miR-31-3p 0 0 1
chr22:44496602|44496733 hsa-miR-184 0 0 1
chr22:44496602|44496733 hsa-miR-185-5p 0 0 1
chr22:44496602|44496733 hsa-miR-185-3p 0 0 1
chr22:44496602|44496733 hsa-miR-621 0 0 1
chr22:44496602|44496733 hsa-miR-541-5p 0 0 1
chr22:44496602|44496733 hsa-miR-541-3p 0 0 1
chr22:44496602|44496733 hsa-miR-1252-5p 0 0 1
chr22:44496602|44496733 hsa-miR-1252-3p 0 0 1
chr22:44496602|44496733 hsa-miR-542-5p 0 0 1
chr22:44496602|44496733 hsa-miR-654-5p 0 0 1
chr22:44496602|44496733 hsa-miR-524-5p 0 0 1
chr22:44496602|44496733 hsa-miR-520d-5p 0 0 1
chr22:44496602|44496733 hsa-miR-516b 0 0 1
chr22:44496602|44496733 hsa-miR-638 1 0 0
chr22:44496602|44496733 hsa-miR-650 1 0 0
chr22:44496602|44496733 hsa-miR-3125 1 0 0
chr22:44496602|44496733 hsa-miR-3141 1 0 0
chr22:44496602|44496733 hsa-miR-3147 1 0 0
chr22:44496602|44496733 hsa-miR-3174 1 0 0
chr22:44496602|44496733 hsa-miR-3195 1 0 0
chr22:44496602|44496733 hsa-miR-3196 1 0 0
chr22:44496602|44496733 hsa-miR-4271 1 0 0
chr22:44496602|44496733 hsa-miR-3652 1 0 0
chr22:44496602|44496733 hsa-miR-3916 1 0 0
chr22:44496602|44496733 hsa-miR-4479 1 0 0
chr22:44496602|44496733 hsa-miR-4510 1 0 0
chr22:44496602|44496733 hsa-miR-4688 1 0 0
chr22:44496602|44496733 hsa-miR-4739 1 0 0
chr22:44496602|44496733 hsa-miR-4748 1 0 0
chr22:44496602|44496733 hsa-miR-5787 1 0 0
chr22:44496602|44496733 hsa-miR-6088 1 0 0
chr22:44496602|44496733 hsa-miR-6127 1 0 0
chr22:44496602|44496733 hsa-miR-6129 1 0 0
chr22:44496602|44496733 hsa-miR-6133 1 0 0
chr22:44496602|44496733 hsa-miR-8072 1 0 0
chr22:44496602|44496733 hsa-miR-8089 1 0 0
chr22:44496602|44496733 hsa-miR-9899 1 0 0
chr22:44496602|44496733 hsa-miR-671-5p 1 0 0
chr22:44496602|44496733 hsa-miR-7106-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6894-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6873-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4695-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4722-5p 1 0 0
chr22:44496602|44496733 hsa-miR-505-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6727-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4655-5p 1 0 0
chr22:44496602|44496733 hsa-miR-1292-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6827-5p 1 0 0
chr22:44496602|44496733 hsa-miR-486-3p 1 0 0
chr22:44496602|44496733 hsa-miR-5006-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6850-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6784-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4640-5p 1 0 0
chr22:44496602|44496733 hsa-miR-7156-3p 1 0 0
chr22:44496602|44496733 hsa-miR-3189-3p 1 0 0
chr22:44496602|44496733 hsa-miR-3177-3p 1 0 0
chr22:44496602|44496733 hsa-miR-6789-3p 1 0 0
chr22:44496602|44496733 hsa-miR-1207-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4763-3p 1 0 0
chr22:44496602|44496733 hsa-miR-6769b-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6812-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6865-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6870-5p 1 0 0
chr22:44496602|44496733 hsa-miR-1343-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6743-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6754-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6756-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6769a-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6815-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6851-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6797-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6808-5p 1 0 0
chr22:44496602|44496733 hsa-miR-1915-3p 1 0 0
chr22:44496602|44496733 hsa-miR-6780b-5p 1 0 0
chr22:44496602|44496733 hsa-miR-328-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4632-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4649-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4685-5p 1 0 0
chr22:44496602|44496733 hsa-miR-4725-3p 1 0 0
chr22:44496602|44496733 hsa-miR-6729-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6738-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6777-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6794-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6795-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6858-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6887-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6889-5p 1 0 0
chr22:44496602|44496733 hsa-miR-939-5p 1 0 0
chr22:44496602|44496733 hsa-miR-10394-3p 1 0 0
chr22:44496602|44496733 hsa-miR-3085-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6856-5p 1 0 0
chr22:44496602|44496733 hsa-miR-3173-3p 1 0 0
chr22:44496602|44496733 hsa-miR-6750-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6791-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6837-5p 1 0 0
chr22:44496602|44496733 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:44496602|44496733
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MAPWLPTLPCFLLRASFVPIAHCML
Nucleotide Sequence CTGGCGCCCTGGTTGCCCACCTTGCCGTGCTTCCTCTTACGTGCTAGCTTTGTACCTATCGCTCACTGCATGCTC
CircID chr22:44496602|44496733
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MPLQTCSPRRSSFRPSWRPGCPPCRASSYVLALYLSLTACS
Nucleotide Sequence TTGCCTCTCCAGACGTGTTCCCCGAGGAGATCTTCCTTCCGTCCTTCCTGGCGCCCTGGTTGCCCACCTTGCCGTGCTTCCTCTTACGTGCTAGCTTTGTACCTATCGCTCACTGCATGCTCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab