CircRNA Information

General Information
circRNA Basic Information
CircID chr22:45187496|45187713
Strand +
CircType exon
Host Gene ENSG00000093000.17;
Algorism CIRI2;
Sequence CTCCCTGTCATCTGCCATACTACGGGACAAATCAGTATCTACTCAAATTCCCACTTCCAGAATGAGAGGACTCATCAGGGGTTTAGGAGTTTGCAAAGCCTTCAAAATGTATCGTGCTTGAATTTTGACTCTTCTGAAATAGAATAACTGACAAATGCTCAAAAAACAAACTTGTTTAACTTTTACTGAAAAGGCTCTCAGTGAAAACTTGTTTTGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:45187496|45187713 hsa-miR-183-5p 0 0 1
chr22:45187496|45187713 hsa-miR-183-3p 0 0 1
chr22:45187496|45187713 hsa-miR-223-5p 0 0 1
chr22:45187496|45187713 hsa-miR-223-3p 0 0 1
chr22:45187496|45187713 hsa-miR-498-5p 0 0 1
chr22:45187496|45187713 hsa-miR-498-3p 0 0 1
chr22:45187496|45187713 hsa-miR-527 0 0 1
chr22:45187496|45187713 hsa-miR-1323 0 0 1
chr22:45187496|45187713 hsa-miR-935 0 0 1
chr22:45187496|45187713 hsa-miR-1299 0 0 1
chr22:45187496|45187713 hsa-miR-548n 0 0 1
chr22:45187496|45187713 hsa-miR-548o-3p 0 0 1
chr22:45187496|45187713 hsa-miR-548o 0 0 1
chr22:45187496|45187713 hsa-miR-129-5p 0 0 1
chr22:45187496|45187713 hsa-miR-875-3p 0 0 1
chr22:45187496|45187713 hsa-miR-518a-5p 0 0 1
chr22:45187496|45187713 hsa-miR-450b-5p 0 1 1
chr22:45187496|45187713 hsa-miR-516b 0 0 1
chr22:45187496|45187713 hsa-miR-197-5p 1 0 0
chr22:45187496|45187713 hsa-miR-1226-5p 1 0 0
chr22:45187496|45187713 hsa-miR-193b-5p 1 0 0
chr22:45187496|45187713 hsa-miR-2115-3p 1 0 0
chr22:45187496|45187713 hsa-miR-605-5p 0 1 0
chr22:45187496|45187713 hsa-miR-4745-5p 1 0 0
chr22:45187496|45187713 hsa-miR-4758-5p 1 0 0
chr22:45187496|45187713 hsa-miR-4769-5p 1 0 0
chr22:45187496|45187713 hsa-miR-365a-5p 1 0 0
chr22:45187496|45187713 hsa-miR-6715b-5p 1 0 0
chr22:45187496|45187713 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr22:45187496|45187713
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MSSAILRDKSVSTQIPTSRMRGLIRGLGVCKAFKMYRA
Nucleotide Sequence CTGTCATCTGCCATACTACGGGACAAATCAGTATCTACTCAAATTCCCACTTCCAGAATGAGAGGACTCATCAGGGGTTTAGGAGTTTGCAAAGCCTTCAAAATGTATCGTGCTTGA
CircID chr22:45187496|45187713
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MFFEHLSVILFQKSQNSSTIHFEGFANS
Nucleotide Sequence TTGTTTTTTGAGCATTTGTCAGTTATTCTATTTCAGAAGAGTCAAAATTCAAGCACGATACATTTTGAAGGCTTTGCAAACTCCTAA
CircID chr22:45187496|45187713
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MRAFSVKVKQVCFLSICQLFYFRRVKIQARYILKALQTPKPLMSPLILEVGI
Nucleotide Sequence CTGAGAGCCTTTTCAGTAAAAGTTAAACAAGTTTGTTTTTTGAGCATTTGTCAGTTATTCTATTTCAGAAGAGTCAAAATTCAAGCACGATACATTTTGAAGGCTTTGCAAACTCCTAAACCCCTGATGAGTCCTCTCATTCTGGAAGTGGGAATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab