CircRNA Information

General Information
circRNA Basic Information
CircID chr22:45924891|45925046
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGATGAGCCTTTGGACCCACCCAGCACCTGCCTGATGAGACTTTGGGCCCGCCCGGCACCCACCTGCCAGCCTAGGGCCCACCCAGCACCCACCTGATGAGCCTTCAGGCCCACCCAGCACCCACCTGCCACTCTAGGGCCCACCTGGTGCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr22:45924891|45925046 hsa-miR-645 0 0 1
chr22:45924891|45925046 hsa-miR-541-5p 0 0 1
chr22:45924891|45925046 hsa-miR-541-3p 0 0 1
chr22:45924891|45925046 hsa-miR-940 0 0 1
chr22:45924891|45925046 hsa-miR-1293 1 0 1
chr22:45924891|45925046 hsa-miR-125a-3p 0 0 1
chr22:45924891|45925046 hsa-miR-296-5p 0 0 1
chr22:45924891|45925046 hsa-miR-654-5p 1 0 1
chr22:45924891|45925046 hsa-miR-1207-5p 1 0 1
chr22:45924891|45925046 hsa-miR-650 1 0 0
chr22:45924891|45925046 hsa-miR-762 1 0 0
chr22:45924891|45925046 hsa-miR-2861 1 0 0
chr22:45924891|45925046 hsa-miR-4322 1 0 0
chr22:45924891|45925046 hsa-miR-4259 1 0 0
chr22:45924891|45925046 hsa-miR-3621 1 0 0
chr22:45924891|45925046 hsa-miR-3665 1 0 0
chr22:45924891|45925046 hsa-miR-3907 1 0 0
chr22:45924891|45925046 hsa-miR-3937 1 0 0
chr22:45924891|45925046 hsa-miR-4481 1 0 0
chr22:45924891|45925046 hsa-miR-4498 1 0 0
chr22:45924891|45925046 hsa-miR-4505 1 0 0
chr22:45924891|45925046 hsa-miR-4507 1 0 0
chr22:45924891|45925046 hsa-miR-4514 1 0 0
chr22:45924891|45925046 hsa-miR-1587 1 0 0
chr22:45924891|45925046 hsa-miR-4651 1 0 0
chr22:45924891|45925046 hsa-miR-4654 1 0 0
chr22:45924891|45925046 hsa-miR-4673 1 0 0
chr22:45924891|45925046 hsa-miR-4688 1 0 0
chr22:45924891|45925046 hsa-miR-4692 1 0 0
chr22:45924891|45925046 hsa-miR-4721 1 0 0
chr22:45924891|45925046 hsa-miR-4736 1 0 0
chr22:45924891|45925046 hsa-miR-4741 1 0 0
chr22:45924891|45925046 hsa-miR-6745 1 0 0
chr22:45924891|45925046 hsa-miR-8072 1 0 0
chr22:45924891|45925046 hsa-miR-4433b-3p 1 0 0
chr22:45924891|45925046 hsa-miR-4433a-3p 1 0 0
chr22:45924891|45925046 hsa-miR-6765-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6861-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4687-3p 1 0 0
chr22:45924891|45925046 hsa-miR-6799-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1236-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4722-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6741-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6742-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6748-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6772-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6793-5p 1 0 0
chr22:45924891|45925046 hsa-miR-2467-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6735-3p 1 0 0
chr22:45924891|45925046 hsa-miR-5088-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1226-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1228-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6771-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6749-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4446-3p 1 0 0
chr22:45924891|45925046 hsa-miR-6802-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6781-5p 1 0 0
chr22:45924891|45925046 hsa-miR-7112-5p 1 0 0
chr22:45924891|45925046 hsa-miR-7160-3p 1 0 0
chr22:45924891|45925046 hsa-miR-1225-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1250-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6792-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1233-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4763-3p 1 0 0
chr22:45924891|45925046 hsa-miR-6769b-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6865-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6893-5p 1 0 0
chr22:45924891|45925046 hsa-miR-5001-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6726-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6743-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6754-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6756-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6769a-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6813-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6819-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6851-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6779-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6808-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6879-5p 1 0 0
chr22:45924891|45925046 hsa-miR-3620-5p 1 0 0
chr22:45924891|45925046 hsa-miR-1909-3p 1 0 0
chr22:45924891|45925046 hsa-miR-328-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4701-3p 1 0 0
chr22:45924891|45925046 hsa-miR-4726-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4745-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6846-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6848-5p 1 0 0
chr22:45924891|45925046 hsa-miR-4758-5p 1 0 0
chr22:45924891|45925046 hsa-miR-3940-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6773-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6766-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6785-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6724-5p 1 0 0
chr22:45924891|45925046 hsa-miR-6791-5p 1 0 0
chr22:45924891|45925046 hsa-miR-10400-3p 1 0 0
chr22:45924891|45925046 hsa-miR-6884-5p 1 0 0
chr22:45924891|45925046 hsa-miR-3619-5p 1 0 0
chr22:45924891|45925046 hsa-miR-99b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr22:45924891|45925046
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MDPPSTCLMRLWARPAPTCQPRAHPAPT
Nucleotide Sequence TTGGACCCACCCAGCACCTGCCTGATGAGACTTTGGGCCCGCCCGGCACCCACCTGCCAGCCTAGGGCCCACCCAGCACCCACCTGA
CircID chr22:45924891|45925046
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MGGPEGSSGGCWVGPRLAGGCRAGPKSHQAGAGWVQRLI
Nucleotide Sequence CTGGGTGGGCCTGAAGGCTCATCAGGTGGGTGCTGGGTGGGCCCTAGGCTGGCAGGTGGGTGCCGGGCGGGCCCAAAGTCTCATCAGGCAGGTGCTGGGTGGGTCCAAAGGCTCATC
CircID chr22:45924891|45925046
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKAHQVGAGWALGWQVGAGRAQSLIRQVLGGSKGSS
Nucleotide Sequence CTGAAGGCTCATCAGGTGGGTGCTGGGTGGGCCCTAGGCTGGCAGGTGGGTGCCGGGCGGGCCCAAAGTCTCATCAGGCAGGTGCTGGGTGGGTCCAAAGGCTCATCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab